PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08791g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 283aa MW: 30348.3 Da PI: 10.1762

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08791g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.9	4e-37	35	91	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGggrrk k + Niben101Scf08791g00001.1 35 PQKCPRCDSNNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGRRKGKCT 91 689**************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-20	5	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	36	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.23	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MEQGRSGGQS DRNHQRKMKM PESLSAVAQP PQPPPQKCPR CDSNNTKFCY YNNYSLTQPR 60 YFCKTCRRYW TQGGTLRNVP VGGGRRKGKC TTRGGGGSSS SSAGESSSRS SQGAQLPPVV 120 PLHNMTPNFS AAAAFFSGNS ISRSQPLNSL YSSGGFLSSL AAMQSQGVNQ PSNSQFGGTS 180 NTVLLQGFHN LPKEPQQSGF YQMVNKETSN ESSIYLSDQT LQFQPTRPLG SWTQRFINHN 240 NMDSWNSSAG SSSGSGGATN STTAGSSLSP NQWPDMPGFG PSP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775304.1	1e-162	PREDICTED: dof zinc finger protein DOF5.8-like
Refseq	XP_016492349.1	1e-162	PREDICTED: dof zinc finger protein DOF5.8-like
TrEMBL	A0A1S4BTY8	1e-160	A0A1S4BTY8_TOBAC; dof zinc finger protein DOF5.8-like
TrEMBL	A0A1U7WKV2	1e-160	A0A1U7WKV2_NICSY; dof zinc finger protein DOF5.8-like
STRING	XP_009775304.1	1e-161	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-26	DNA binding with one finger 2.4