PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08719g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 161aa    MW: 18493.4 Da    PI: 10.053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08719g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000357799123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C+ Cg+ Fs    L  H+r+H
  Niben101Scf08719g00002.1 77 HECSFCGEEFSVGQALGGHMRKH 99
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.91E-73499No hitNo description
PfamPF139126.6E-113560IPR007087Zinc finger, C2H2
SMARTSM003553.83658IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9953663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-473100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.5E-977101IPR007087Zinc finger, C2H2
SMARTSM003550.077799IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9377104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTIKRSREEE LTVEKLAMAN CVNILKKNSS LARRVFECRT CKKQYESFQA LGGHRASHKK  60
PKLNTVTDLV KPKKKKHECS FCGEEFSVGQ ALGGHMRKHR DKLQKLKQQD SDDDNSAGEQ  120
VVEKKISGTE KALFLDLNLT PYENELMLRI IPLRVVQHSW L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779270.11e-105PREDICTED: zinc finger protein ZAT11-like
RefseqXP_009779271.11e-105PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A1U7WYF41e-104A0A1U7WYF4_NICSY; zinc finger protein ZAT11-like
STRINGXP_009779270.11e-104(Nicotiana sylvestris)
STRINGXP_009779271.11e-104(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.11e-30C2H2 family protein