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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08651g04004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 784aa MW: 86695.8 Da PI: 5.5088 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.8 | 8.5e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ + W++++iyr++++r++lt+GW+ F ++++L++gD Niben101Scf08651g04004.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDQAWTFRHIYRGQPKRHLLTTGWSVFISSKRLCAGD 208 99*****************************954.5444.48******************************************* PP EEEEEE-SSSEE..EEEEE-S CS B3 79 fvvFkldgrsefelvvkvfrk 99 +v+F + +++ +l++++ r+ Niben101Scf08651g04004.1 209 SVLFIR--DEKSQLLLGIKRA 227 *****4..4666678888765 PP | |||||||
2 | Auxin_resp | 123.6 | 1.4e-40 | 252 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s rr++Gt++gvsdldp+rW+ S+Wr+L+ Niben101Scf08651g04004.1 252 AAHAAANNSPFSIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGVSDLDPIRWKSSQWRNLQ 334 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-43 | 114 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 118 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.58E-18 | 125 | 226 | No hit | No description |
SMART | SM01019 | 4.5E-21 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-20 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-35 | 252 | 334 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.31E-9 | 649 | 735 | No hit | No description |
Pfam | PF02309 | 9.4E-10 | 650 | 743 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.947 | 657 | 741 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
MKAPSNGYIA NSGEGDSKVM NSELWHACAG PLVSLPPIGS LVAYFPQGHS EQVAASMQKE 60 TDGIPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDQEALI LSDMGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELMARD LHDQAWTFRH 180 IYRGQPKRHL LTTGWSVFIS SKRLCAGDSV LFIRDEKSQL LLGIKRANRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFSIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF 300 ETEESGVRRY MGTITGVSDL DPIRWKSSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP 360 FYICPPPFFR PKFPKQPSFP GDESDIENAL KRGMPWISDE FGLKDAPSSI FPGLSLVQWM 420 SMQQNNHNPV AQSRLPNVLH SNIGTDDHSK ALSGATDGDA PSCSTSPSTN NFQVSPQNFL 480 TRNQGQAILV DESIVDPSQE QNKSEFRMKH ELPFSKGSEQ SKYKGNGTEN LEAASSTTSY 540 GLDSSGFNFS LPALCAEGDI QSHSRNNLPS AANIDGLTPD ALLSRDYDSG KDMQNLFSPF 600 GNTPRDIETE LSAAGINSQQ FGVPNMSYQP RCSNDLAVND NGVLNNNSWT NQTPRMRTYT 660 KVQKRGSVGR TIDVTRYKGY DELRHDLARM FGIEGQLEDP QRTEWKLVYV DHENDILLVG 720 DDPWEEFVSC VQSVKILSSA EVQQMSLDGD LGNVPVANQA SSGTDSGNAW RGHYDDNSAA 780 SFNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-173 | 19 | 355 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29. Functionally redundant with ARF7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16461383, ECO:0000269|PubMed:17259263}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and ethylene. {ECO:0000269|PubMed:16461383}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791842.1 | 0.0 | PREDICTED: auxin response factor 19-like | ||||
Swissprot | Q8RYC8 | 0.0 | ARFS_ARATH; Auxin response factor 19 | ||||
TrEMBL | A0A103Y265 | 0.0 | A0A103Y265_CYNCS; Auxin response factor | ||||
STRING | Pavir.Db01975.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1302 | 24 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |