PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08604g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 288aa MW: 32302.4 Da PI: 4.7001

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08604g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.5e-30	119	175	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYY+Ct ++C +kk+vers ++p++++itYe+ H h Niben101Scf08604g00003.1 119 DDGYKWRKYGQKSIKNSPYPRSYYKCTNPRCGAKKQVERSGDEPDTFVITYESLHLH 175 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.6E-28	112	175	IPR003657	WRKY domain
PROSITE profile	PS50811	26.429	113	178	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-26	115	175	IPR003657	WRKY domain
SMART	SM00774	4.6E-34	118	177	IPR003657	WRKY domain
Pfam	PF03106	1.4E-24	119	175	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MAMEELEELK NSWSYQDELI KELLDNESPF FLATQDSNST TCPSSTHTKS FISVVSSVPN 60 MDDIESGLSV TSYGIQSHHV SPARTFGLER GLNLMMSKPE TNETKYTMRI KTCGNAMADD 120 GYKWRKYGQK SIKNSPYPRS YYKCTNPRCG AKKQVERSGD EPDTFVITYE SLHLHFAYPF 180 LTLDPTQFLE QPNKKPKLTI SKAQNEESEN ASEIDESPKC VNSSPVVDFD QKLGFGGMGP 240 QGLLEDMVPL MAPMTSSQPI TPIIAEDVIW SQSENNKIPK AIIELMPD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-21	117	175	16	74	Probable WRKY transcription factor 4
2lex_A	2e-21	117	175	16	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019263702.1	1e-163	PREDICTED: probable WRKY transcription factor 49
TrEMBL	A0A314L5C8	1e-162	A0A314L5C8_NICAT; Putative wrky transcription factor 49
STRING	XP_009764599.1	1e-162	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12075	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	9e-42	WRKY DNA-binding protein 49