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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08590g03016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 266aa MW: 29332.3 Da PI: 8.2117 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.6 | 7.5e-40 | 33 | 94 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+a++cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Niben101Scf08590g03016.1 33 KEQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 94 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 30 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.8E-34 | 35 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.106 | 37 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 39 | 75 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDTSHWPQGI GLVKAVEPSK PLPATERKPR PQKEQAINCP RCNSTNTKFC YYNNYSLSQP 60 RYFCKTCRRY WTEGGSLRNV PVGGGSRKNK RSSSSSNNSS SSTSSSYKKI PDFTIPTSSS 120 QNPKILNEPH DLNLSFNPTT TSNFSNISEF MALPLMNPNS TTSFMSSIMP QLSDSNNIMH 180 SSSSTGLPNL HDLKPTLNFS WDGFDNNNGY GSLQGEATGA KLFFPLDDLK NVSTANDDHE 240 FDEQNRGQAA ESHGFWNGML GGGSSW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019238122.1 | 1e-175 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
TrEMBL | A0A1J6KS52 | 1e-174 | A0A1J6KS52_NICAT; Dof zinc finger protein dof4.6 | ||||
STRING | XP_009801284.1 | 1e-170 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-41 | Dof family protein |