PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08446g01006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 310aa MW: 34415.1 Da PI: 7.0693

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08446g01006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.7	9.2e-14	259	281	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 CggC +lL+YP+GApsVRC++C Niben101Scf08446g01006.1 259 CGGCAVLLMYPYGAPSVRCSSCR 281 **********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.8E-10	256	284	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.8E-11	259	281	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MQQALLADTA TEKKGEVAED EDTGPPPGWQ LTPQLQPLQT SPSPSGTQQA LLADIEMEKK 60 EEVAEDEDNG PPPGWQLIPQ LQPLQTSTPP LGTQQTLADV EMGNKQHCVV EKEGHPRGSE 120 SIPMAGHSSP PTPPPHSSTS VASSEMEMGS KQEGTTNEEV MPPIESNLHH IYPGLSLQHL 180 NPHHMQQHFL PKWVRWFVVL ADNYLLIHRG LNWVFTRQRK SSRPVDKGKA LDQQKTKQQI 240 IFILLLLSSP AHEVGQVKCG GCAVLLMYPY GAPSVRCSSC RQMTKIGVHN RRPPLSVQQA 300 RRRHPSYQVH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765272.1	1e-119	PREDICTED: arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X3
TrEMBL	A0A1U7VB67	1e-118	A0A1U7VB67_NICSY; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like isoform X3
STRING	XP_009765270.1	1e-117	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-16	lsd one like 2