PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf08355g04023.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 349aa MW: 37881.6 Da PI: 7.9625

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf08355g04023.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	27	86	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e +l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvP+Ggg+rknkk + Niben101Scf08355g04023.1 27 EPSLNCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKIK 86 56789****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-27	18	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-33	29	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.422	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MTNLDNKEES QSSGGGGRKT SATRPQEPSL NCPRCDSPNT KFCYYNNYSL SQPRHFCKTC 60 RRYWTKGGAL RNVPIGGGCR KNKKIKTSCS SRLSGDSKDT SVSSDIGRLQ FFHGLSPAMD 120 FQLGGLNFPR LSSNTSTSGS IFNQFSSFGD ISTTFAAAIG SSSCFSLDPS GSCSGSLLGF 180 NNFPFLSSMV KQGDGGVEEM GSMGIHHGAM ASSIESLSSI NQDLHWKLQQ QRLAMLFGGV 240 SSPVPHLDQN QIQKPQPILF QNLDISSKQQ EEEAAVFGNN INPRKDHGSG NDHGNNNLAT 300 EWFFDNSFGT VNPTSTNSSS GNANDQNNNN NNWNSMQAWS NLNQYSTLP

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MTNLDNKEES QSSGGGGRKT SATRPQEPSL NCPRCDSPNT KFCYYNNYSL SQPRHFCKTC  60
RRYWTKGGAL RNVPIGGGCR KNKKIKTSCS SRLSGDSKDT SVSSDIGRLQ FFHGLSPAMD  120
FQLGGLNFPR LSSNTSTSGS IFNQFSSFGD ISTTFAAAIG SSSCFSLDPS GSCSGSLLGF  180
NNFPFLSSMV KQGDGGVEEM GSMGIHHGAM ASSIESLSSI NQDLHWKLQQ QRLAMLFGGV  240
SSPVPHLDQN QIQKPQPILF QNLDISSKQQ EEEAAVFGNN INPRKDHGSG NDHGNNNLAT  300
EWFFDNSFGT VNPTSTNSSS GNANDQNNNN NNWNSMQAWS NLNQYSTLP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009774290.1	0.0	PREDICTED: dof zinc finger protein DOF5.7
TrEMBL	A0A1U7WJ67	0.0	A0A1U7WJ67_NICSY; dof zinc finger protein DOF5.7
STRING	XP_009774290.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5242	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	2e-54	Dof family protein