PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08326g00014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 335aa    MW: 37668.6 Da    PI: 6.7262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08326g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000222850223
                              EETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                              kC+ Cgk   ++++LkrH +  H
  Niben101Scf08326g00014.1 28 KCTFCGKQADTQHSLKRHYKDaH 50
                              8*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0112750IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9952750IPR007087Zinc finger, C2H2
SMARTSM00355245983IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.40.50.11102.7E-31152335IPR013830SGNH hydrolase-type esterase domain
PfamPF006571.6E-7163324IPR001087GDSL lipase/esterase
SuperFamilySSF522663.33E-7169269IPR013830SGNH hydrolase-type esterase domain
SuperFamilySSF522663.33E-7302327IPR013830SGNH hydrolase-type esterase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAAENYEAFT QAQREILLRN PPSANNIKCT FCGKQADTQH SLKRHYKDAH KKVPTTTVYR  60
CGICGNFETS EANLQIHKAF FQHGYLRYKF EFPSPADRPR APIISFSDAS SGYPGGPILF  120
CGIDLDSQVA TLRLGLPFVP SHLGQAGSID YTIQRVDFAS TSDVISTCVF YISIGTNDYI  180
HYYLWNVSDV QSCYLPWSFN QFLAQTMKQE IKNLYNAHVR KVVVMGLAPI GCAPYNSWLY  240
HSNNGQCATI NDVIFCDAFE VSMDIIQNHD HYGFNVTDEA CCGLGKYKGW ILCISPEMAC  300
SKASNHIWWD QFHLTDAVNA ILADNVCSSS HTPMW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009592723.11e-111PREDICTED: GDSL esterase/lipase At5g08460-like isoform X1
RefseqXP_016510077.11e-111PREDICTED: GDSL esterase/lipase At5g08460-like
TrEMBLA0A1S4D9I81e-110A0A1S4D9I8_TOBAC; GDSL esterase/lipase At5g08460-like
STRINGXP_009592723.11e-111(Nicotiana tomentosiformis)