PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08321g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 301aa    MW: 34575.9 Da    PI: 4.9491
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08321g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY45.91.1e-141191572358
                               EEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY  23 sYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                               +YYrCt++   gC ++k+v++s++dp+++e+tY+g+H+ 
  Niben101Scf08321g01005.1 119 GYYRCTHKntqGCLATKQVQKSDKDPQIFEVTYKGKHKY 157
                               7******98889*************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007747.2E-10115159IPR003657WRKY domain
SuperFamilySSF1182909.94E-12118158IPR003657WRKY domain
PfamPF031062.0E-12118156IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-13119158IPR003657WRKY domain
PROSITE profilePS5081113.632119160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEKVKAWEKK TLITELTQGM EFVDRLKSKI DPLASPEECD LLLLKVLSSL DKSLSILNLK  60
AVSVIRDPFC CSKNDGSDLD YYSRDQGKNI VFKKRKLLEK WSKQVRISGI EGPNYDDGGY  120
YRCTHKNTQG CLATKQVQKS DKDPQIFEVT YKGKHKYKAS QSVDISEETR KANYNKNQYE  180
PQKQNVGNPE AENLNNIKEE EFPFTQLKAE SEKSQFFAKS MEPFTSQITS ESLYLSFFPT  240
QEEEIETDQI LHSSKLSHIE FSTTPTSVIN SPFCWYSDLS VDDQVDNIDP TPMIDISEFF  300
T
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764202.11e-179PREDICTED: probable WRKY transcription factor 41
RefseqXP_016435685.11e-179PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S3X6S11e-178A0A1S3X6S1_TOBAC; probable WRKY transcription factor 41
TrEMBLA0A1U7V7T81e-178A0A1U7V7T8_NICSY; probable WRKY transcription factor 41
STRINGXP_009764202.11e-178(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-23WRKY family protein