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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08250g02009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 441aa MW: 49998.9 Da PI: 7.12 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 70 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ Cgk Fs+ L H+++ H Niben101Scf08250g02009.1 70 HICSECGKQFSSGKALGGHMSSaH 93 68******************9988 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 135 | 154 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 C Cgk F++k +L H+r Niben101Scf08250g02009.1 135 MCDLCGKNFPSKKSLFGHMR 154 5******************8 PP | |||||||
3 | zf-C2H2 | 12.8 | 0.00037 | 369 | 389 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk+F+++ L H ++H Niben101Scf08250g02009.1 369 CSICGKTFTSHQALGGHKSSH 389 **************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.45E-9 | 68 | 92 | No hit | No description |
SMART | SM00355 | 0.045 | 70 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.138 | 70 | 98 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.8E-10 | 70 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 72 | 93 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.45E-9 | 129 | 156 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-4 | 132 | 156 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0044 | 134 | 156 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.45 | 134 | 161 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 136 | 156 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.7E-7 | 136 | 158 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.33 | 367 | 389 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 367 | 394 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 369 | 389 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-8 | 369 | 390 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MEADNQEENH ELKRSLQEIN RSCEKAVFSG DNSSLKVKIK MPKLEEVVEK EEEKEINGGQ 60 KEEILKKKDH ICSECGKQFS SGKALGGHMS SAHVQANNRE ESWKNKQLKV NNYGQYSKRS 120 RILVEEEEEG VKKIMCDLCG KNFPSKKSLF GHMRCHPDRD WRGMKPPNNK DNFKNKGVLV 180 FPANNSLDYD DDDDNDDYFL NTQEYKELHE IESASNINVA PAFPKADLKD CLKSWAVKDK 240 RGRSAKLSSS ISTSDDKELH DAVHQLIRLV NGVNNINTPK NRHTKTDELE VMCSNSVTPD 300 LPLKDKAKGK RKVDDIEDDY CSGIESKDCF VMANKKRSRP VQKEQQQQTQ YNSTSTQQIK 360 NVTPGKKMCS ICGKTFTSHQ ALGGHKSSHN KFKMTIENTI DQETKIKSAA QDDGSEINIG 420 NASKVLDFDL NELPDVDDCY R |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019246375.1 | 0.0 | PREDICTED: uncharacterized protein LOC109226025 | ||||
TrEMBL | A0A1S4DNJ4 | 0.0 | A0A1S4DNJ4_TOBAC; uncharacterized protein LOC107831697 | ||||
STRING | XP_009591959.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2050 | 22 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 1e-15 | C2H2 family protein |