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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf08137g02017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 451aa MW: 49187.9 Da PI: 5.5643 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.2e-14 | 37 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 r +WT+eE++++v+a k++G W+ I + g ++t+ q++s+ qk+ Niben101Scf08137g02017.1 37 REKWTEEEHQRFVEALKLYGRA-WRQIEGECGhvGTKTAIQIRSHAQKF 84 789*****************88.******999999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.437 | 32 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-14 | 32 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-15 | 35 | 87 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 8.8E-9 | 36 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-10 | 37 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-7 | 37 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.86E-7 | 39 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MISSKLETVT TQGKASACLA NEITLKVRKP YAITKQREKW TEEEHQRFVE ALKLYGRAWR 60 QIEGECGHVG TKTAIQIRSH AQKFFAKVAR DSGTDGDESL NAIDIPPPRP KKKPLHPYPR 120 KMADSPVTNK SVSGQPERSS PPNALGRDSC SPDSVLSEIC SDVSEYPVAE QQSSRFSPRS 180 CTTDVHTANI ISGQDNDESM TSKSNVVKEI PAASKPVAAS SSSIFSSGME CDFVPRETSC 240 PGEKLAVEAP LASIKLFGQM VLVPDATKLA LQSPAGSCNS LPSKTTENEI ETNNGNVIHG 300 FQANSQFILP VVPGNMIPSA FWFKQDMLEN NPEGVAAFPT TIPWLSWYQD LVYISSCSQT 360 AADTTTLCRQ PEDEEPQREG SSSGSSVGSA SDVDDGNRSS ETVESKYTTK SDKWNNSKGF 420 VPYKRCLAQR DGMTSGVELE ERESQRVRVC S |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009768903.1 | 0.0 | PREDICTED: uncharacterized protein LOC104219851 isoform X1 | ||||
Refseq | XP_009768904.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X2 | ||||
Refseq | XP_009768905.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X2 | ||||
Refseq | XP_016493565.1 | 0.0 | PREDICTED: uncharacterized protein LOC107812899 isoform X1 | ||||
Refseq | XP_016493566.1 | 0.0 | PREDICTED: protein REVEILLE 1-like isoform X2 | ||||
TrEMBL | A0A1S4BXD5 | 0.0 | A0A1S4BXD5_TOBAC; protein REVEILLE 1-like isoform X2 | ||||
TrEMBL | A0A1S4BXE4 | 0.0 | A0A1S4BXE4_TOBAC; uncharacterized protein LOC107812899 isoform X1 | ||||
TrEMBL | A0A1U7VR70 | 0.0 | A0A1U7VR70_NICSY; uncharacterized protein LOC104219851 isoform X1 | ||||
TrEMBL | A0A1U7W2Q1 | 0.0 | A0A1U7W2Q1_NICSY; protein REVEILLE 1-like isoform X2 | ||||
STRING | XP_009768903.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7447 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 5e-34 | MYB_related family protein |