PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08127g07002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 192aa    MW: 22422.8 Da    PI: 5.9478
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08127g07002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.94.3e-1385142562
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                               +++rr+ +NRe+ArrsR RK+  ++eL   v  L++eN+ L ++l++ ++  +++ +e
  Niben101Scf08127g07002.1  85 RKQRRMVSNRESARRSRMRKQRHLDELWSQVLRLQTENQNLMNKLNQVTESHERVFQE 142
                               79*********************************************99988877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-1481145IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.39283146IPR004827Basic-leucine zipper domain
PfamPF001701.1E-1085137IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.41E-1285135No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-1285136No hitNo description
CDDcd147021.10E-1886136No hitNo description
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MISSEGAAIH YFAPENNPSS LPIDFGFMHK NLSPFQYNTF LTNNNIQNYQ TSFPVKDFSQ  60
QPSCISSNST SDESEEQQIR VIDERKQRRM VSNRESARRS RMRKQRHLDE LWSQVLRLQT  120
ENQNLMNKLN QVTESHERVF QENIQLKEEA SDLRRMITDI QIDSPFHAFS DFEEVTCNTA  180
HLKAESSNQS TT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197104RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794536.11e-131PREDICTED: basic leucine zipper 43-like
RefseqXP_016478391.11e-131PREDICTED: basic leucine zipper 43-like
TrEMBLA0A1S4ANX61e-130A0A1S4ANX6_TOBAC; basic leucine zipper 43-like
TrEMBLA0A1U7XY391e-130A0A1U7XY39_NICSY; basic leucine zipper 43-like
STRINGXP_009794536.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-46basic leucine-zipper 42