PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf08102g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 525aa    MW: 57403.3 Da    PI: 7.0757
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf08102g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix57.92.8e-18155241186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                               +W++  + +L+ea+ e+  +l+rg+l++ +Weev++ +  r ++ ++s +qCk+k +nl+kryk ++++++++   ++s++p+f+
  Niben101Scf08102g00001.1 155 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNG-GITTSHWPWFK 238
                               5*************************************767778899************************99.556669***** PP

                  trihelix  84 qle 86 
                               q+e
  Niben101Scf08102g00001.1 239 QME 241
                               **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.9E-21153243No hitNo description
SMARTSM005950.0036163248IPR006578MADF domain
Gene3DG3DSA:3.40.1160.101.4E-65274518IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536332.62E-52279518IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.456279519IPR015963Uridylate kinase, bacteria
CDDcd042542.08E-113282519No hitNo description
PfamPF006964.7E-22283498IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MASCEDDFSL LGDDNAAVTV TPTTTTAHTS NPTYHHHHQP FSHRYKPAQI HAPPISSGSP  60
KNISGDEDGD GYSDINNTPS YHIGVNPYDT DSNPFENDVD VNRSRVNQSN DNKRTDQEDI  120
SDNGTPYNYK RSKITSSSAA SGGSGSGEYR KDREEWSDTA IACLLEAYME KFVQLNRGNL  180
RGRDWEEVAA MVSERCEKQS KSVEQCKNKV DNLKKRYKLE RHRMSNGGIT TSHWPWFKQM  240
EQIYQEKLHL HPKRTKPLYG TAVAGASGQI VKSKSSMGPR WRRVVLKISG AALAGVTPNT  300
NDPNNLDPKV AMLVAREVSI ACRLGIEVAI VVGGRNFFCG DTWVTSTGLD RCTAYQIGMM  360
ATMMNSILLQ SALEKLGVQT RVQSAFSMPE LAEPYSRQRA MRHLEKGRVV IFGGIGAGTG  420
NPLFSTDTAA ALRASEIHAD ALLKGTNVEG VDVCDSRNNN VAAEHISFRE LVSGGASPLD  480
LMAVTLCEEN AIPVVIFNLH GPGNISRALC GEQVGTLIDQ IGRVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A1e-5528151850279Uridylate kinase
3nwy_B1e-5528151850279Uridylate kinase
3nwy_C1e-5528151850279Uridylate kinase
3nwy_D1e-5528151850279Uridylate kinase
3nwy_E1e-5528151850279Uridylate kinase
3nwy_F1e-5528151850279Uridylate kinase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250790.10.0PREDICTED: uncharacterized protein LOC109229713
TrEMBLA0A1S4AJN50.0A0A1S4AJN5_TOBAC; uncharacterized protein LOC107798398
TrEMBLA0A1U7YW420.0A0A1U7YW42_NICSY; uncharacterized protein LOC104248417
STRINGXP_009802965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein