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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07894g01004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 115aa MW: 13313 Da PI: 9.8181 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.2 | 5.2e-30 | 54 | 107 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+L G+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Niben101Scf07894g01004.1 54 PRLRWTPDLHLSFVRAIERLDGQERATPKLVLQTMNVRGLSIAHVKSHLQMYRS 107 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 50 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.162 | 50 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-14 | 52 | 108 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-22 | 54 | 109 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-7 | 55 | 106 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MSYSSDLNEE SNDAIGLRDD MIEKTAEGNS SFEDIGNYEN KRSRVRQYVR SKLPRLRWTP 60 DLHLSFVRAI ERLDGQERAT PKLVLQTMNV RGLSIAHVKS HLQMYRSKKL GEFGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-19 | 55 | 109 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-19 | 55 | 109 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-19 | 55 | 109 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-19 | 55 | 109 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-19 | 55 | 109 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-19 | 55 | 109 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-19 | 55 | 109 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-19 | 55 | 109 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018628204.1 | 2e-65 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X2 | ||||
Swissprot | Q700D9 | 8e-27 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A1J6K834 | 5e-64 | A0A1J6K834_NICAT; Putative myb family transcription factor | ||||
STRING | XP_009607761.1 | 1e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5516 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 2e-39 | G2-like family protein |