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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf07851g02001.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 879aa MW: 96494 Da PI: 6.184 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 57.3 | 2.6e-18 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+
Niben101Scf07851g02001.1 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
56789****************************************************97 PP
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| 2 | START | 78.7 | 1.4e-25 | 164 | 289 | 2 | 126 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEEC CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevis 86
+aee+++e+++ka+ ++ Wv ++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W ++++ +e+ s
Niben101Scf07851g02001.1 164 IAEETLAEFLSKATGTAVDWVPMPGMKPGPDSVGIFAISRSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRNVEVFTMFS 247
7899******************************************************.7777777777**************** PP
TT.EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEE CS
START 87 sg.galqlmvaelqalsplvp.RdfvfvRyirqlgagdwviv 126
g g+++l +++ +a+++l+p Rdf+++Ry+ +l+ g++v+
Niben101Scf07851g02001.1 248 AGnGTIELLYTQIYAPTTLSPaRDFWTLRYTTTLENGSFVVS 289
**************************************9985 PP
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| 3 | START | 57.4 | 4.6e-19 | 328 | 411 | 125 | 205 |
EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
++++S++ + p+ s++vRa++lpSg+li+p+++g+s +++v+h +l++++ +++lr+l++s+ + ++k++ a+l++ ++
Niben101Scf07851g02001.1 328 VCERSLSGTGAGPNaasASQFVRAQMLPSGYLIRPCDGGGSIIHIVDHLNLEAWSAPEILRPLYESSKVVAQKMTIAALRYARQ 411
68888888888888888999***********************************************************99875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50071 | 15.418 | 20 | 84 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 1.92E-16 | 21 | 86 | IPR009057 | Homeodomain-like |
| SMART | SM00389 | 1.0E-15 | 22 | 88 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 5.13E-16 | 25 | 85 | No hit | No description |
| Pfam | PF00046 | 6.9E-16 | 26 | 83 | IPR001356 | Homeobox domain |
| Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
| CDD | cd14686 | 5.14E-6 | 77 | 116 | No hit | No description |
| PROSITE profile | PS50848 | 22.741 | 154 | 421 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 1.26E-28 | 159 | 294 | No hit | No description |
| Gene3D | G3DSA:3.30.530.20 | 7.9E-16 | 162 | 286 | IPR023393 | START-like domain |
| SMART | SM00234 | 1.3E-23 | 163 | 412 | IPR002913 | START domain |
| Pfam | PF01852 | 2.6E-22 | 164 | 289 | IPR002913 | START domain |
| Gene3D | G3DSA:3.30.530.20 | 7.9E-16 | 327 | 406 | IPR023393 | START-like domain |
| Pfam | PF01852 | 3.1E-16 | 328 | 411 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 1.26E-28 | 345 | 414 | No hit | No description |
| Pfam | PF08670 | 1.9E-48 | 735 | 878 | IPR013978 | MEKHLA |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 879 aa Download sequence Send to blast |
MAMVVQQHRE SSSGSITKHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC 120 ENGFMREQLH TASAATTDVS CESVVTTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA 180 VDWVPMPGMK PGPDSVGIFA ISRSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRNV 240 EVFTMFSAGN GTIELLYTQI YAPTTLSPAR DFWTLRYTTT LENGSFVVST SFAVACLRIS 300 NLATFVLSYE YFADGLLSVP SIPPRPKVCE RSLSGTGAGP NAASASQFVR AQMLPSGYLI 360 RPCDGGGSII HIVDHLNLEA WSAPEILRPL YESSKVVAQK MTIAALRYAR QIAQETSGEV 420 VYGLGRQPAV LRTFSQRLSR GFNDAINGFS DDGWSLLGSD GGEDVIVAVN SRKNIATTSV 480 PLSPLGGNLC AKASMLLQNV PPAVLVRFLR EHRSEWADFN VDAYVASSMK SCSYAYPGMR 540 PTRFTGSQII MPLGHTIEHE EMLEVIRLEG HSIGQEDAFM PRDIHLLQMC SGTDENAVGA 600 CSELVFAAID EMFPDDAPLL PSGFRIIPLE SKSSDPQDTS NAHRTLDLAS SLEVGPATNP 660 ATGDVVSGYS ARSVLTIAFQ FPFEDNLQDN VATMARQYVR SVVSSVQRVA MAISPAGLNS 720 TFGSKLSPGS PEAVTLSHWI CQSYSYHMGT ELLQTDSRGD ESVLKNLWQH QDAVLCCSLK 780 SLPVFIFANK AGLDMLETTL VALQDITLDK IFDESGRKVL FAEFPKIMEQ GFVYLPGGMC 840 ISAMGRHISY EQAIAWKVFA SEETSVHCLA FSFINWSFV |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009776589.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein REVOLUTA | ||||
| Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
| TrEMBL | A0A1U7WPI1 | 0.0 | A0A1U7WPI1_NICSY; homeobox-leucine zipper protein REVOLUTA | ||||
| STRING | XP_009776589.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA457 | 24 | 140 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G60690.1 | 0.0 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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