PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07841g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 428aa    MW: 47318.3 Da    PI: 7.3913
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07841g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32253306255
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Niben101Scf07841g00007.1 253 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 306
                               9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.51E-15250306IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28251306IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23253306IPR006447Myb domain, plants
PfamPF002497.7E-7254305IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009887Biological Processorgan morphogenesis
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPLEGVFIEP QSTNSKQIPD LSLNISPPNS SSSPSCNNIN ELLATSSFDL SSRCTTEVSE  60
NHGRLEFSKS GNCLTELSLA HPTTTTTTTT TSATIYDESR RGFLDLPRNL YYNNHYSQNY  120
NHMVQPMNQI NHGVSSLDVS DGLRPIKGIP VYNHNRSFPF LANLDKEKDP KMCFYPMASS  180
SSPLFSPTSS SPYINTRFNG ISSSYQVPHH HIHHSQYGVG LGHSSHETAT SHHSLMRSRF  240
LPKLPAKRSM RAPRMRWTST LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH  300
LQMYRTVKTT DKPAASSGQS DGSGEDDLTT IGSTGAGDRT GLCRFTDQRG VSDGSVQPES  360
DYPSTANPTL WSNSSSSREG WLQANSNDAN GLRSPCFPSQ QRSGHQIEKN PSLEFTLGRP  420
DWVEKEHD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16254308458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16254308458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16254308357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16254308357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16254308357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16254308357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16254308458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16254308458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16254308458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16254308458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16254308458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16254308458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261232.10.0PREDICTED: transcription repressor KAN1 isoform X1
TrEMBLA0A314LAJ50.0A0A314LAJ5_NICAT; Transcription repressor kan1
STRINGXP_009624603.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24682355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-63G2-like family protein