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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07829g04011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 27207.7 Da PI: 6.4098 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 8.2e-05 | 36 | 85 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + erE+ R++iN+ f L l + + + Ka+iL +A +++k++ Niben101Scf07829g04011.1 36 KRIHKAEREKLKREHINELFLGLANALELS----EQMNRKASILNEAARFVKDM 85 688899*********************998....6889**********999975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-6 | 32 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-10 | 32 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.08E-5 | 33 | 90 | No hit | No description |
PROSITE profile | PS50888 | 10.48 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MDTESPATIL EKDATAVETS LDSSHLGKKN QKKAPKRIHK AEREKLKREH INELFLGLAN 60 ALELSEQMNR KASILNEAAR FVKDMLSQIK HLRTENTTLL SESQYLSVEK KELQDETSAL 120 EAEIGRLQNE VEAREAKTNL DLNLAPPEIQ HPEFALQNNY MRLPASEHAF QDSQIMNPAY 180 VFPFSCNPQV HLAPDATKST STPTSTVKKP QPRYPTPADV WPSQIFEKRP RLLGQEVQDG 240 A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019232396.1 | 1e-163 | PREDICTED: transcription factor bHLH47-like | ||||
Swissprot | Q9SN74 | 5e-44 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A1J6KDC6 | 1e-162 | A0A1J6KDC6_NICAT; Transcription factor bhlh47 | ||||
STRING | XP_009612854.1 | 1e-162 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 4e-41 | bHLH family protein |