PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf07817g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 232aa MW: 26107.6 Da PI: 7.5345

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07817g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.8	1.9e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq+ Niben101Scf07817g00001.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEYRLRDPVYGCVGLISVLQH 91 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 +l+q++ +l +k+e Niben101Scf07817g00001.1 92 KLKQVQDDLLNAKKE 106 ******9888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.757	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-43	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNATQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISVLQ HKLKQVQDDL LNAKKELATY IGPSAMLPIL 120 QHPGYIQQHP NNPSSSTMMP YNMQPMLGLP TGMQQQQQQH GAQLMLRDPQ QQQQQNQQQV 180 IEAHQLAAAM AAREQQDMLR TYEQQPQQQQ HPQFNSGYAT SFSLTFLSVA DA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-50	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-50	3	110	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019234324.1	1e-132	PREDICTED: LOB domain-containing protein 36-like isoform X2
Swissprot	Q9FKZ3	4e-77	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1J6K9Q5	1e-130	A0A1J6K9Q5_NICAT; Lob domain-containing protein 36
STRING	XP_009774046.1	1e-131	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-79	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]