PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07812g00015.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 235aa MW: 26717.1 Da PI: 9.8532

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07812g00015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.4	1.4e-31	43	92	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ Niben101Scf07812g00015.1 43 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 92 79***********************************************8 PP
2	K-box	71.5	2.5e-24	111	178	4	71
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 s++ s +ea+a+++qqe++kL+ +i nLq+++R++lGe+L L+l++L++Leq++ek+++kiRskK Niben101Scf07812g00015.1 111 SNTGSISEANAQYYQQEASKLRGQIGNLQNQNRNMLGESLAALTLRDLKNLEQRIEKGISKIRSKKIA 178 4445599**********************************************************964 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.4E-41	35	94	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.669	35	95	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.17E-46	36	112	No hit	No description
SuperFamily	SSF55455	3.01E-33	36	108	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	37	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-33	37	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.5E-27	44	91	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-33	57	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-33	72	93	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.2E-16	119	177	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	10.896	121	235	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDASYMGTSF AGNFQSEGME FQSDLTREIS PQRKLGRGKI EIKRIENTTN RQVTFCKRRN 60 GLLKKAYELS VLCDAEVALI VFSSRGRLYE YANNSVKATI ERYKKACSDS SNTGSISEAN 120 AQYYQQEASK LRGQIGNLQN QNRNMLGESL AALTLRDLKN LEQRIEKGIS KIRSKKIAET 180 ERAQQQQQMN LMPGSSSYEL VPPPQQFDTR NYLQVNGLQS NNHYIRQDQP SLQLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
1tqe_R	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
1tqe_S	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
5f28_A	1e-20	35	103	1	69	MEF2C
5f28_B	1e-20	35	103	1	69	MEF2C
5f28_C	1e-20	35	103	1	69	MEF2C
5f28_D	1e-20	35	103	1	69	MEF2C
6byy_A	1e-20	35	103	1	69	MEF2 CHIMERA
6byy_B	1e-20	35	103	1	69	MEF2 CHIMERA
6byy_C	1e-20	35	103	1	69	MEF2 CHIMERA
6byy_D	1e-20	35	103	1	69	MEF2 CHIMERA
6c9l_A	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
6c9l_B	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
6c9l_C	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
6c9l_D	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
6c9l_E	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
6c9l_F	1e-20	35	103	1	69	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019233178.1	1e-148	PREDICTED: floral homeotic protein AGAMOUS isoform X2
Refseq	XP_019233179.1	1e-148	PREDICTED: floral homeotic protein AGAMOUS isoform X2
Refseq	XP_019233180.1	1e-148	PREDICTED: floral homeotic protein AGAMOUS isoform X3
Swissprot	Q43585	1e-143	AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBL	A0A1J6KBS9	1e-147	A0A1J6KBS9_NICAT; Floral homeotic protein agamous
STRING	XP_009802759.1	1e-142	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	2e-98	MIKC_MADS family protein

Publications ? help Back to Top
Cheung AY,Zhan XY,Wang H,Wu HM Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein. Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8 [PMID:8632979]