PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07773g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 1119aa    MW: 126425 Da    PI: 5.7743
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07773g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11811.4e-56201363118
                      CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 
                               +e ++rwl++ ei++iL n++k+++t e+++rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYa
  Niben101Scf07773g00004.1  20 SEvQHRWLRPAEICEILRNYRKFHITPEAPHRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYA 104
                               5559********************************************************************************* PP

                      CG-1  87 hseenptfqrrcywlLeeelekivlvhylevk 118
                               h+ee+ +fqrr+yw+Le++l +iv+vhylevk
  Niben101Scf07773g00004.1 105 HGEEDDNFQRRSYWMLEQDLMHIVFVHYLEVK 136
                               *****************************985 PP
2CG-157.72.4e-1813518073118
                      CG-1  73 LKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                               +Kvg+++vl+cyYah+ee+ +fqrr+yw+Le++l +iv+vhylevk
  Niben101Scf07773g00004.1 135 VKVGSIDVLHCYYAHGEEDDNFQRRSYWMLEQDLMHIVFVHYLEVK 180
                               69*****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.93915141IPR005559CG-1 DNA-binding domain
SMARTSM010767.3E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4922135IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-14135179IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143721.601137185IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.4E-5532620IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.87E-17534620IPR014756Immunoglobulin E-set
PfamPF018331.3E-6534619IPR002909IPT domain
PROSITE profilePS5029719.2717838IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.6E-18718828IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.0E-17729831IPR020683Ankyrin repeat-containing domain
CDDcd002044.84E-16730826No hitNo description
PfamPF127962.0E-6731794IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.057734766IPR002110Ankyrin repeat
SMARTSM002482000734763IPR002110Ankyrin repeat
PROSITE profilePS500889.484767799IPR002110Ankyrin repeat
SMARTSM002480.0036767796IPR002110Ankyrin repeat
SMARTSM00248900806835IPR002110Ankyrin repeat
SuperFamilySSF525403.98E-7940992IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000153.8941963IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.968942971IPR000048IQ motif, EF-hand binding site
PfamPF006120.0052943962IPR000048IQ motif, EF-hand binding site
SMARTSM000159.4E-4964986IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56965989IPR000048IQ motif, EF-hand binding site
PfamPF006128.1E-5967986IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MADCGSDPPG FRLDITQILS EVQHRWLRPA EICEILRNYR KFHITPEAPH RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKVGSI DVLHCYYAHG EEDDNFQRRS YWMLEQDLMH IVFVHYLEVK  180
GNKANVGCVR SIKSAHSNYL NDCSLSDSFP RSHKKLASVN ADSTSVASTL TSAHEEAEWE  240
DSHQACSRFQ SYPERASGMD RHLVENRDTI YSSYGSPQSS VEYTSLPGID GGGKCGLGDF  300
ASGPQRTIDL GSQEPVSQHC SNGTKSLQSL SCIIFVMNWG LTKYFVGEMV CQDDFKNNLS  360
VQRNWQYSFG DSASQFHGQI VNQDLIGDSS YDLVNKNLSS DLYTGRGQSY LYPDAQEEQL  420
TQLNIQYLNS LVEVQGDFNQ ENSMDMLGLG DYSTIKQPHL NSVKMEEGLK KVDSFSRWVV  480
KELENVEELH MQPTNRISWN VIDTENDGSC LPTQLHVDSD SLNPSLSQEQ VFSIIDFSPN  540
WAYSNLETKV LITGRFLKSE GELIECKWSC MFGEIEVPAE VLADGVLRCH APPHKPGVLP  600
FYVTCSNRLA CSEVREFEYR LGAYQEFGAA NVSASEMHLL ERIESLLSLE PVSSCHSSDS  660
MEAAKEKQNT VNRIICMMEE ENQQMIERVS DHDTSQCGVK EDLFLERKLK QNFYAWLVRQ  720
VTDDGRGRTA IDDEGQGVLH LAAALGYDWA LKSILASGVS VDFRDMNGWT ALHWAAFYGR  780
EKTVVGLVSL GASPGALTDP SAEFPLGRTP ADLASANGHK GISGFLAESS LTTHLSKLTV  840
TDAKEELASE VSGAKVGETI TERVAVTTTG DEMPDVLSLK DSLAAIRNAT QAAARIHQIF  900
RVQSFQRKQI IECSDNELSF DENALSIVAS RACKLGQNNG LAHAAATQIQ KKFRGWNKRK  960
EFLLIRQKIV KIQAHVRGHQ VRKKYKPIIW SVGILEKVIL RWRRKRSGLR GFRSEVVMNK  1020
PSIQDDSLPE DDYDFLKEGR KQTEVRMQKA LSRVKSMTQY PEGRAQYRRL LTAAEGLREV  1080
KDVPTCILES PEDTSYPEEE LFDVENLLDD DAFMSIAFE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261727.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X2
TrEMBLA0A314L9E60.0A0A314L9E6_NICAT; Calmodulin-binding transcription activator 2
STRINGXP_009798947.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22302146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains