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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07766g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 135aa MW: 15322.6 Da PI: 4.5012 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.5 | 1.6e-15 | 49 | 132 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k +++s+v+ +l lp +f+++h k ++ +tl +e+ ++e k+ k++ +++GW++F+ +++L +gD +vF+l+ Niben101Scf07766g00007.1 49 FVKPMLQSHVTGGFWLGLPVHFCKTHLPK--RDEFVTLINENEDEFETKYLALKTG----MSGGWRGFAIDHELLDGDALVFQLI 127 89*********************999433..4457***************666666....89*********************99 PP SSSEE CS B3 86 grsef 90 + ++f Niben101Scf07766g00007.1 128 EPTKF 132 86666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-18 | 40 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.79E-21 | 42 | 134 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.70E-22 | 47 | 135 | No hit | No description |
Pfam | PF02362 | 5.0E-13 | 49 | 132 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.025 | 49 | 135 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-16 | 49 | 135 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MNLTSSLLLC GMMITLLFLN WNCPTTEGKY DFKDGAELQS EIDADFPSFV KPMLQSHVTG 60 GFWLGLPVHF CKTHLPKRDE FVTLINENED EFETKYLALK TGMSGGWRGF AIDHELLDGD 120 ALVFQLIEPT KFKVE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019257395.1 | 8e-66 | PREDICTED: B3 domain-containing protein At3g19184-like | ||||
Swissprot | Q1G3M3 | 9e-47 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A1J6HTZ8 | 2e-64 | A0A1J6HTZ8_NICAT; B3 domain-containing protein | ||||
STRING | XP_009612757.1 | 5e-64 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-49 | B3 family protein |
Publications ? help Back to Top | |||
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