PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07765g01011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 125aa MW: 14291.4 Da PI: 9.0831 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.1 | 1.3e-07 | 34 | 78 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r+RR++i ++ +eL +l+ +K++ ae+ + A +YI+ Lq Niben101Scf07765g01011.1 34 SIAARQRRKKITEKTQELGKLILGG-----QKMNTAEMFRAAYNYINFLQ 78 6788******************875.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.18E-7 | 26 | 81 | No hit | No description |
PROSITE profile | PS50888 | 11.788 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-11 | 29 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-11 | 31 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-8 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.7E-5 | 34 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MLPEFESFPV YKIENGLATK ESSKCNEKNL SAQSIAARQR RKKITEKTQE LGKLILGGQK 60 MNTAEMFRAA YNYINFLQAQ VGILQVMASY QEKLYSSDKC LVPEMFIEAP ANDHEFQHSN 120 PRVLK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016493190.1 | 4e-51 | PREDICTED: transcription factor bHLH52-like | ||||
Swissprot | Q9SA82 | 1e-18 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | A0A1S4BWD8 | 1e-49 | A0A1S4BWD8_TOBAC; transcription factor bHLH52-like | ||||
TrEMBL | A0A1U7XW08 | 2e-49 | A0A1U7XW08_NICSY; transcription factor bHLH52 | ||||
STRING | XP_009795118.1 | 3e-50 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3856 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 4e-21 | bHLH family protein |
Publications ? help Back to Top | |||
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