PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07744g00028.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 261aa    MW: 30072.5 Da    PI: 4.9381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07744g00028.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.4e-131461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT +Ed +l++ +   G  +Wk +++  g+ R++k+c++rw +yl
  Niben101Scf07744g00028.1 14 RGPWTIDEDHKLLNFILNNGIQCWKMVPKFAGLQRCGKSCRLRWINYL 61
                              89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129420.646965IPR017930Myb domain
SuperFamilySSF466893.63E-191196IPR009057Homeodomain-like
SMARTSM007171.1E-51363IPR001005SANT/Myb domain
PfamPF002498.3E-111461IPR001005SANT/Myb domain
CDDcd001675.14E-51661No hitNo description
PROSITE profilePS500904.2286297IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.5E-56586IPR009057Homeodomain-like
SMARTSM007172.766102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-587104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTID EDHKLLNFIL NNGIQCWKMV PKFAGLQRCG KSCRLRWINY  60
LRPDLKREPL SEAEENQIIQ LHACFGRTDN EIKNHWNTRI KKRLKLLGID PLTHNPIEPI  120
NLEQKPDETI IQSNMLTHDH ETENSSTSSE TKKTETDIKT DDITNDFSVV ENEEYNLCGN  180
LDVDLLDNTT KTMSYSLETA ESINFSSASV ATESSSNVVP AEGQDSIQQW FYSVDSLFSW  240
DNNVNQHGVG ENFFFWRNYN H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-17121045108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499865.11e-174PREDICTED: myb-related protein 315-like
TrEMBLA0A1S4CFB61e-172A0A1S4CFB6_TOBAC; myb-related protein 315-like
STRINGXP_009596112.11e-173(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-63myb domain protein 40