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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07693g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 28094 Da PI: 6.8079 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.4e-18 | 84 | 133 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg++ ta++Aa+a++ a++ ++g Niben101Scf07693g00011.1 84 TYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTYPTAQMAARAHDVAALTIKG 133 69****888.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.327 | 84 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-31 | 84 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-34 | 84 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-12 | 84 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-21 | 84 | 142 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.01E-30 | 85 | 143 | No hit | No description |
PRINTS | PR00367 | 3.0E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEDQEQRINL QTQADYHRHG LNSPSNTTSS SSSFSSSFSS SNELTRKDYY SKRSSRKVQE 60 LVEINEIGEE KKKRKKDEDD KHPTYRGVRK RSWGKWVSEI REPRKKSRIW LGTYPTAQMA 120 ARAHDVAALT IKGNSAYLNF PYLAHLLPRP TSASSKDIQA AAAKAAAIIF PEENEEIRVE 180 PSRVELRSCH SSTTLFLENT QEELANSLSR EDDDTFFDLP DLSVDVVDQT DRYWVASGPV 240 RSGPGPDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 82 | 142 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 75 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019231547.1 | 1e-123 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 1e-49 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A314KHA7 | 1e-122 | A0A314KHA7_NICAT; Ethylene-responsive transcription factor erf034 | ||||
STRING | XP_009791350.1 | 1e-109 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 9e-40 | ERF family protein |
Publications ? help Back to Top | |||
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