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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf07663g01004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
HSF |
Protein Properties |
Length: 217aa MW: 23977.1 Da PI: 5.3187 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf07663g01004.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 119.2 | 2.4e-37 | 26 | 116 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86
Fl+k+y+++ed+++++++sw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F
Niben101Scf07663g01004.1 26 FLTKTYQLVEDPSIDDVVSWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCF 101
9*****************************************************************99.........******** PP
XXXXXXXXXXXXXXX CS
HSF_DNA-bind 87 kkgkkellekikrkk 101
++g+k+ll++i+r+k
Niben101Scf07663g01004.1 102 RRGEKSLLRDIQRRK 116
*************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MIPPPIERNG GESTAGETAR YVPTPFLTKT YQLVEDPSID DVVSWNEDGS TFIVWNPTEF 60 ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNDC FRRGEKSLLR DIQRRKVVTP 120 IATPCAAVTA VVTVNAPPAQ TPRPVISTSD SGDEQVISSN SSTSGTAGLL LSCPTSEGFE 180 VLGLLIWLGQ SSPHKLAFGV ELGPMFILFS CWEKTNG
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |