PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07611g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 29608 Da PI: 8.1305 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.7e-09 | 9 | 56 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 W+ eE++ + +a++ + + +W +Ia++++ +t +++k ++q + Niben101Scf07611g01002.1 9 MWSREEEKAFENAIAIHWIEdsklQWQKIASMVP-CKTIEELKQHYQLL 56 5*****************99**************.99*********965 PP | |||||||
2 | Myb_DNA-binding | 38.5 | 2.7e-12 | 132 | 176 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r Rt+ q+ s+ qky Niben101Scf07611g01002.1 132 PWTEEEHRLFLLGLDKFGKGDWRSISRNYVISRTPTQVASHAQKY 176 7*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 6.764 | 5 | 60 | IPR017884 | SANT domain |
SMART | SM00717 | 0.016 | 6 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-4 | 9 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.17E-8 | 10 | 57 | No hit | No description |
SuperFamily | SSF46689 | 8.61E-9 | 10 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.7E-6 | 10 | 55 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.887 | 125 | 181 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-17 | 127 | 182 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-10 | 129 | 179 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.7E-17 | 129 | 179 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.7E-10 | 130 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.78E-10 | 132 | 177 | No hit | No description |
Pfam | PF00249 | 8.3E-11 | 132 | 176 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MSASTISLMW SREEEKAFEN AIAIHWIEDS KLQWQKIASM VPCKTIEELK QHYQLLVDDV 60 TDIEAGNVPI PIYTGEETSS STKDTSHCYS GISTGRSNCS YIKGFSGSVH DQIGQGGKAS 120 SKSEQERRKG IPWTEEEHRL FLLGLDKFGK GDWRSISRNY VISRTPTQVA SHAQKYFIRL 180 NSMNRDRRRS SIHDITSVNN GEVVTNQTPI TGQQTNSSPS NAVGPNVGQR NQLNMHGLGI 240 YGAPMGHPVA APPGHHVSAV GTPFLRSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019265953.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 6e-78 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A314L2D0 | 0.0 | A0A314L2D0_NICAT; Transcription factor myb1r1 | ||||
STRING | XP_009762003.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5801 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49010.1 | 4e-75 | MYB family protein |
Publications ? help Back to Top | |||
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