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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07593g03015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 25737.9 Da PI: 9.7522 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.9 | 1.2e-10 | 61 | 97 | 1 | 40 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsK 40 ++ +hn+ Er+RR+++N +++Lr+llP+ +++Kl K Niben101Scf07593g03015.1 61 KKLSHNASERNRRKKMNFLYSTLRSLLPPT---NHQKLKK 97 6789*************************9...8888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.103 | 60 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.29E-7 | 61 | 114 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-8 | 61 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-8 | 61 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-9 | 61 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSSEWSFEEA QKYDQQNNNI LQNEITNDLF EGLHIDHNSP SSYQQQYSKE KIFHNQSLMA 60 KKLSHNASER NRRKKMNFLY STLRSLLPPT NHQKLKKEIE KLSQTKDLLL SKKADSFTQP 120 NNNNNNNQRN TTSSASISAT PLCNGQVLVQ ISTTQTSFPI SQVFQTLEED WYVLLNATSF 180 KSSGEKTFHN LHFQMQGTVG MEIQSLKTKL LVMFEKNQNR SLV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019264786.1 | 1e-121 | PREDICTED: transcription factor ORG2-like isoform X2 | ||||
TrEMBL | A0A1S3YVA5 | 1e-119 | A0A1S3YVA5_TOBAC; transcription factor ORG2-like | ||||
TrEMBL | A0A1U7WL74 | 1e-114 | A0A1U7WL74_NICSY; uncharacterized protein LOC104228545 | ||||
STRING | XP_009779323.1 | 1e-114 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2226 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-26 | bHLH family protein |