PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07554g01010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 432aa MW: 48235.4 Da PI: 8.2648

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07554g01010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	98.2	5e-31	87	192	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+kv tpsdv+k++rlv+pk++ae++ +++ +++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v Niben101Scf07554g01010.1 87 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldsSSNDKGGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIV 171 89**************************955666889****************************************** PP EEEE-.SS.SEE..EEEEE-S CS B3 81 vFkld.gr.sefelvvkvfrk 99 F++ g+ + +l++ ++r+ Niben101Scf07554g01010.1 172 SFQRGaGElVKHRLFIDWRRR 192 *665777788888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.5E-41	79	194	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-31	84	191	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.43E-26	85	175	No hit	No description
Pfam	PF02362	1.0E-28	87	192	IPR003340	B3 DNA binding domain
SMART	SM01019	1.8E-22	87	193	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.057	87	188	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MNFFTSRRGI QQQTGSSKGM CPFSQSSSSS STSSSYHNHQ QQQQQQHRES TELMLMDSSP 60 VATRNHSDGD EVAGGEAHHL IEREHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN 120 DKGGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGAGEL 180 VKHRLFIDWR RRPDAPDMNP YMVPHHFSNW NHGRLFLQPF QRGPPVPSFT QQHPHSQYSH 240 HLLLEASSNI AQQHSHNYPH SYVYGIGNTS PAYYNTCFHN SSISTNATVV NANPCAGGSG 300 NYVRSGATAS QLLSQHELEI MQMQRGCNSV SGSSGGEPMV FNSVPVVQGK VAAKRLRLFG 360 VNMDCPMDHS DLFSSSTIPT TYSHAPHFSS SSSTSSTPLV QLRKFNSQLE AVPSDEESSE 420 KGKASMSLDL DI

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MNFFTSRRGI QQQTGSSKGM CPFSQSSSSS STSSSYHNHQ QQQQQQHRES TELMLMDSSP  60
VATRNHSDGD EVAGGEAHHL IEREHMFDKV VTPSDVGKLN RLVIPKQHAE KYFPLDSSSN  120
DKGGLLLNFE DRNGKPWRFR YSYWNSSQSY VMTKGWSRFV KEKKLDAGDI VSFQRGAGEL  180
VKHRLFIDWR RRPDAPDMNP YMVPHHFSNW NHGRLFLQPF QRGPPVPSFT QQHPHSQYSH  240
HLLLEASSNI AQQHSHNYPH SYVYGIGNTS PAYYNTCFHN SSISTNATVV NANPCAGGSG  300
NYVRSGATAS QLLSQHELEI MQMQRGCNSV SGSSGGEPMV FNSVPVVQGK VAAKRLRLFG  360
VNMDCPMDHS DLFSSSTIPT TYSHAPHFSS SSSTSSTPLV QLRKFNSQLE AVPSDEESSE  420
KGKASMSLDL DI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-62	80	193	1	114	B3 domain-containing transcription factor NGA1
5os9_B	3e-62	80	193	1	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803160.1	0.0	PREDICTED: B3 domain-containing transcription factor NGA1-like
TrEMBL	W6HX90	0.0	W6HX90_NICBE; NGATHAb
STRING	XP_009803160.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2817	23	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	4e-69	B3 family protein

Publications ? help Back to Top
Fourquin C,Ferr The essential role of NGATHA genes in style and stigma specification is widely conserved across eudicots. New Phytol., 2014. 202(3): p. 1001-13 [PMID:24483275]