PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf07508g02004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 36614.4 Da PI: 9.5709 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.5 | 1.8e-55 | 18 | 144 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeel+++yL kkv ++++ + +i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWka Niben101Scf07508g02004.1 18 LPPGFRFHPTDEELITHYLSKKVVDNNFFA-IAIGEVDMNKVEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKA 101 79*************************877.78***************888999******************************* PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 tgkdke+++ +++lvg+kktLvfy+grapkgekt+Wv+heyrle Niben101Scf07508g02004.1 102 TGKDKEIFR-GKSLVGMKKTLVFYRGRAPKGEKTNWVIHEYRLE 144 *********.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-61 | 15 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.766 | 18 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MENFVGPVVK EEDQQLQLPP GFRFHPTDEE LITHYLSKKV VDNNFFAIAI GEVDMNKVEP 60 WDLPWKAKMG EKEWYFFCVR DKKYPTGLRT NRATAAGYWK ATGKDKEIFR GKSLVGMKKT 120 LVFYRGRAPK GEKTNWVIHE YRLEGRLSLQ NLPKTTKQND WVISRVFYKS TGGNKAHISG 180 LMRLNTTETE MANSVLQTLS DSESSHVHCF SNFVTAQKSQ KAMTNYFNNS SIPSLSNKFA 240 FNQTLPPQGT LLNPGSFPMQ DPSSLRNLNQ NYGQNMVQNL KKEKEIVSVS QETGVSTDMN 300 NEFSSSAAVV GPQYLDYLWN Y |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-55 | 9 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-55 | 9 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-55 | 9 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-55 | 9 | 175 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-55 | 9 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-55 | 9 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-55 | 9 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-55 | 9 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-55 | 9 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-55 | 9 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-55 | 9 | 175 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-55 | 9 | 175 | 9 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-55 | 9 | 175 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-55 | 9 | 175 | 6 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019258047.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like isoform X1 | ||||
Swissprot | Q9FLJ2 | 1e-118 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A314LGQ0 | 0.0 | A0A314LGQ0_NICAT; Nac domain-containing protein 100 | ||||
STRING | XP_009803819.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-120 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
---|---|---|---|
|