PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07465g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 340aa    MW: 37973.5 Da    PI: 9.9153
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07465g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind373.53.6e-1143934018301
                 GAGA_bind  18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvl 102
                               +s+k     q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l+++e s++     + +v+
  Niben101Scf07465g00006.1  39 PSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRESSISGGGQIARGVV 118
                               4444.....***************************************************************9998888899999 PP

                 GAGA_bind 103 sgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader. 186
                               ++ ++ ++++ +++p++++++++ r ++ +e+ p++  a+e ++ +++k   rak+pk+ + +kk+ k     kkvk+e++d + 
  Niben101Scf07465g00006.1 119 KHMHHPQHVHVHNQPHMGEPTYNPRGMHVNESIPVSPVAPEPTKPRRNK---RAKEPKAMTGSKKTPKA---SKKVKRETEDLNq 197
                               99999999999999********************988777666655555...55555554444333322...2333333333112 PP

                 GAGA_bind 187 ............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
                                                           sk ++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yP
  Niben101Scf07465g00006.1 198 ttfgksqewkgvqemgdasddlnrqlavSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYP 282
                               34566678999************************************************************************** PP

                 GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                               LP+++++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLk+hWAkHGtn+++ti+
  Niben101Scf07465g00006.1 283 LPAVPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNHWAKHGTNRYITIK 340
                               *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.0E-14621340IPR010409GAGA-binding transcriptional activator
PfamPF062172.1E-10332340IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MQNWGCSLYG ILERINHAGL MCQDLPIAFS VMWLMQHQPS MKQIMAIMAE RDAAIQERNL  60
ALSEKKAALA ERDMAILQRD SAIAERNNAI MERDNAIATL QYRESSISGG GQIARGVVKH  120
MHHPQHVHVH NQPHMGEPTY NPRGMHVNES IPVSPVAPEP TKPRRNKRAK EPKAMTGSKK  180
TPKASKKVKR ETEDLNQTTF GKSQEWKGVQ EMGDASDDLN RQLAVSKPDW KDQDLGLNQV  240
AFDETTMPVP VCSCTGVLRP CYKWGNGGWQ SSCCTTNLSM YPLPAVPNKR HARIGGRKMS  300
GSAFTKLLSR LAAEGHDLSN PVDLKNHWAK HGTNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313105.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_009798749.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009798750.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009798751.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451527.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451528.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451530.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016451531.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509512.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509513.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509514.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509515.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_016509516.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_018628854.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_018628855.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_018628856.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_018628857.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
RefseqXP_019244940.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_019244941.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
SwissprotQ8L9991e-130BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A076L2D60.0A0A076L2D6_TOBAC; GAGA-binding transcriptional activator
TrEMBLA0A1J6J2730.0A0A1J6J273_NICAT; Protein basic pentacysteine6
TrEMBLA0A1U7Y9Y30.0A0A1U7Y9Y3_NICSY; protein BASIC PENTACYSTEINE6-like
STRINGXP_009798749.10.0(Nicotiana sylvestris)
STRINGXP_009610156.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-116basic pentacysteine 6