PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf07405g02009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 354aa MW: 38372.4 Da PI: 9.4281

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07405g02009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.6	2.4e-37	72	130	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + ++cprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+ Niben101Scf07405g02009.1 72 AVQECPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSN 130 6789****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-34	54	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.3E-32	73	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MVFSSISAYL DPANWQQQAG HSIQNPQFQS VQPQRTLAAP PLVQTHVGGG GTIRPGSMAD 60 RARLANIPMA EAVQECPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRSVPVG 120 GGCRRNKRSN NSTKATNNNN NTPKSPASST STGGCRQIAT NSGSTSNNNN SFSSPSSAAS 180 LLGLMTPQIH HPLRFMSPLG QLTDHHFTPN DNNITMNYSA ISSSSAPVAG TNENMSFQLG 240 MGGNLEQWRL QQQVANQFPN FYGGLDSSSA SGLYPFHPAY YTSNDAGGVT VTSTQIRPKI 300 TNPMLTQLAL MKMEDNHEHS SLSRQFVGNE NWSNGNAWNE LSASFSSSST SNAL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MVFSSISAYL DPANWQQQAG HSIQNPQFQS VQPQRTLAAP PLVQTHVGGG GTIRPGSMAD  60
RARLANIPMA EAVQECPRCE STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRSVPVG  120
GGCRRNKRSN NSTKATNNNN NTPKSPASST STGGCRQIAT NSGSTSNNNN SFSSPSSAAS  180
LLGLMTPQIH HPLRFMSPLG QLTDHHFTPN DNNITMNYSA ISSSSAPVAG TNENMSFQLG  240
MGGNLEQWRL QQQVANQFPN FYGGLDSSSA SGLYPFHPAY YTSNDAGGVT VTSTQIRPKI  300
TNPMLTQLAL MKMEDNHEHS SLSRQFVGNE NWSNGNAWNE LSASFSSSST SNAL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780702.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
Refseq	XP_016473568.1	0.0	PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBL	A0A1S4AA97	0.0	A0A1S4AA97_TOBAC; dof zinc finger protein DOF2.4-like
TrEMBL	A0A1U7WL54	0.0	A0A1U7WL54_NICSY; dof zinc finger protein DOF2.4-like
STRING	XP_009780702.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	3e-48	DNA binding with one finger 2.4