PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf07393g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 219aa MW: 25629.7 Da PI: 8.8307

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07393g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.5	3e-20	66	118	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k Niben101Scf07393g00006.1 66 KKRLTSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 118 5679************************************************9 PP
2	HD-ZIP_I/II	116.1	2e-37	65	155	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 kk+rl+++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ y +++e+++L++e ++ Niben101Scf07393g00006.1 65 KKKRLTSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKSKQLERLYDSLKQDYGLVSREKQKLQNEEQA 149 9************************************************************************************ PP HD-ZIP_I/II 87 Lreelk 92 +++++ Niben101Scf07393g00006.1 150 TKKQVN 155 999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-19	54	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.362	60	120	IPR001356	Homeobox domain
SMART	SM00389	1.2E-17	62	124	IPR001356	Homeobox domain
CDD	cd00086	1.68E-16	65	121	No hit	No description
Pfam	PF00046	1.3E-17	65	118	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.0E-22	67	127	IPR009057	Homeodomain-like
PRINTS	PR00031	6.3E-6	91	100	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.3E-6	100	116	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDWNGNLRPF VSRPAPPDNS FNFLYSYNYD QYPGMEMKYA MQTQNGVLPT MDKLNNNFAM 60 NQLDKKKRLT SDQLESLENS FQEEIKLDPD RKMKLAKELG LQPRQIAVWF QNRRARWKSK 120 QLERLYDSLK QDYGLVSREK QKLQNEEQAT KKQVNSTVYT EISGEETVES TSMPISNKTR 180 GITTSNHQNN NNNNMAECSY VFNVNNVEGF NPVMPPYWV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARWKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758049.1	1e-149	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Refseq	XP_016490887.1	1e-149	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	6e-50	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1S4BPS4	1e-148	A0A1S4BPS4_TOBAC; putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1U7V734	1e-148	A0A1U7V734_NICSY; putative homeobox-leucine zipper protein ATHB-51
STRING	XP_009758049.1	1e-149	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3869	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	6e-52	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]