PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07391g04028.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 332aa    MW: 36160.4 Da    PI: 5.0244
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07391g04028.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36251162102
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d++++elisw+e+g++f+v+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F
  Niben101Scf07391g04028.1  25 FLTKTYQLVDDPAIDELISWNEDGTTFIVWKPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCF 100
                               9*****************************************************************99.........******** PP

                               XXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkks 102
                               +kg+k ll++i+r+k 
  Niben101Scf07391g04028.1 101 RKGEKGLLRDIQRRKI 116
                               *************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-3816108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-3621114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.0E-212548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-216375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-217688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1709.2E-4186211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MVPSPVEQTG ESTAGENQRS PPTPFLTKTY QLVDDPAIDE LISWNEDGTT FIVWKPAEFA  60
RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP DRWEFANDCF RKGEKGLLRD IQRRKISPAG  120
TAVTAVSPIV AVNAAQAVTV AVAPAVRLLS PSNSGDEQVL SSNSSPAATG AAAAVLRTTT  180
CTTTPELLEE NERLRKENAL LSQELNRLRS LCNNVYNLMS NYTGNPSEMP AGIPEGRALE  240
LLPAGQVAAE MDGGATATPA ECSGVKAEED ISPRLFGVSI GVKRVRRSSE EESEREGRVQ  300
DQVQLHGSDV KSEPLDSGSG HHDGQPWIDR LR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-262511429129Heat shock factor protein 1
5d5v_B2e-262511429129Heat shock factor protein 1
5d5v_D2e-262511429129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760921.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_016444574.10.0PREDICTED: heat stress transcription factor B-2b-like isoform X1
SwissprotQ9T0D31e-108HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A1S3XXH50.0A0A1S3XXH5_TOBAC; heat stress transcription factor B-2b-like isoform X1
TrEMBLA0A1U7V7G90.0A0A1U7V7G9_NICSY; heat stress transcription factor B-2b
STRINGXP_009760921.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-85HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]