PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07375g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 289aa MW: 32226.5 Da PI: 4.2994 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.5 | 6e-38 | 22 | 80 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk+++s+ Niben101Scf07375g01002.1 22 HAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKSRRSR 80 6779***************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-28 | 8 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-32 | 23 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.686 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MLAFPSRPMI MMERNRKSNV EHAPNCPRCA STNTKFCYYN NYSLSQPRYF CKACRRYWTK 60 GGSLRNVPVG GGCRKSRRSR STRKDDNTLL TPNPALSGNE AVGADIDLAD VFAKYLNQGT 120 RNDHGQDNIL QESPLADQDY CSIGASLSNS PSLDSLVNPS SFENESQLDE AIIMGNYQDY 180 PCGFLQEEQI QGGDSSIHEV SGQDFLDFNP SFVEMQAMLG GEIMGQGEEF GYNASFAWQP 240 MMQFQEFGSI LDQDDDQLKN STANLASDIN NYGSSFDLSS YEILRDLEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266430.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.2-like | ||||
Swissprot | Q9SVC5 | 8e-41 | DOF35_ARATH; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A314L0R9 | 0.0 | A0A314L0R9_NICAT; Dof zinc finger protein dof3.5 | ||||
STRING | XP_009628285.1 | 1e-178 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 3e-37 | Dof family protein |