PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07343g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 280aa    MW: 31898.6 Da    PI: 6.1638
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07343g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.89.6e-13165223563
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               ++ +r+++NRe+ArrsR RK++ +e+L++ +  L+ e ++Lk+++   + +++ +++++
  Niben101Scf07343g00002.1 165 RKRKRMISNRESARRSRMRKQKHLENLRNQANRLKVESRDLKNRIHLVTSHCQLVQTKN 223
                               5789************************************************9877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5021710.174163226IPR004827Basic-leucine zipper domain
SMARTSM003389.6E-10164225IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-8164217No hitNo description
PfamPF001701.2E-9165223IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.73E-10165216No hitNo description
CDDcd147023.50E-21166217No hitNo description
PROSITE patternPS000360168183IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MLSTFPVIIL SSDGTFSNQF PSFFDSFIPW DYVESTFTFP EQVVESIFSP NQTPTLEPVI  60
SHSGSGSDNS KPESPNSSFC SDEPNMNNHS PWECLESAFI LPEQRVESVF SPNLSPTAEP  120
VPSNCGSGPD KYITVSPNSS SGSDELNMNN DGPNSGSDIL FINERKRKRM ISNRESARRS  180
RMRKQKHLEN LRNQANRLKV ESRDLKNRIH LVTSHCQLVQ TKNEMLQTES VLLQQRLENI  240
REILLARQLQ QLYNSSAWPC NNYVEQRPQI IFNQPIINHH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164185RKRKRMISNRESARRSRMRKQK
2177184RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804217.11e-166PREDICTED: G-box-binding factor 1-like
TrEMBLA0A1U7YJF01e-164A0A1U7YJF0_NICSY; G-box-binding factor 1-like
STRINGXP_009804217.11e-165(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28202251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.21e-27basic leucine-zipper 6