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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07294g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 484aa MW: 53288.8 Da PI: 9.7446 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 67 | 87 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Niben101Scf07294g00015.1 67 CEICNKGFQRDQNLQLHRRGH 87 *******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00036 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Niben101Scf07294g00015.1 142 WKCEKCSKKYAVQSDWKAHSKTC 164 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.5E-7 | 64 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 64 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.11 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 107 | 137 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.7E-4 | 130 | 163 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.5E-7 | 137 | 162 | No hit | No description |
SMART | SM00355 | 140 | 142 | 162 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MMSGDVFSFP SSVKAVLPPH ELQTNPNPKP NPASSKKRRN LPGTPDPDAE VIALSPKSLM 60 ATNRFLCEIC NKGFQRDQNL QLHRRGHNLP WKLKQKNKDE IVKKKVYICP EKTCIHHDAS 120 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREKD SFITHRAFCN 180 ALAEESSRIT SVGANNLNFP NMNNTLLNQQ SNLHGISQLG TFYRPEFGNM ATGNSLHQQQ 240 QQKPRLSLWL DQANNNPLQM SANSNLFDST TTSGFVDMMQ MPSSNVFGSS STAVNFSLSS 300 SQGTSMAETL SSLYSDSTQN NHLAKSSTPM SATALLQKAA QMGSTKSNQS TFFSNSFNLI 360 TSSSSSPSNT PTFSSLHSSE TTDQKFPKIS EDYTVSLTEG NNGLIGCTNF SSSTNTKAIN 420 LDQAIMQTVG MQSPTVSINM QQGMNNCLTR DFLGIRNEPF LSQEMAKFAS LSSAMGLNHY 480 SSSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-26 | 138 | 196 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 6e-26 | 138 | 196 | 3 | 72 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230976.1 | 0.0 | PREDICTED: zinc finger protein JACKDAW-like | ||||
Swissprot | Q700D2 | 1e-113 | IDD10_ARATH; Zinc finger protein JACKDAW | ||||
TrEMBL | A0A314KK23 | 0.0 | A0A314KK23_NICAT; Zinc finger protein jackdaw | ||||
STRING | XP_009778699.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 1e-87 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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