PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07231g05006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 515aa MW: 56187.3 Da PI: 5.2076

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07231g05006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.6e-39	163	222	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Niben101Scf07231g05006.1 163 PDKILPCPRCNSIDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNS 222 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-30	160	220	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.3E-32	165	221	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.817	167	221	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	169	205	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MRESKDPEIK LFGKKIALPE NEKVLPLTLS GEDSGYKNSG NASCGVKDSD TSVKDSETNT 60 GFDCDGCLED EKASSEEKDE EIDEENQEAE KNHISGELSK TKSEEKDQNQ MMEGSEDPKL 120 SSESDNNPKT PNIDEDSPAI KTSKTKNDPN DASNSQEKPL KKPDKILPCP RCNSIDTKFC 180 YYNNYNVNQP RHFCKSCQRY WTAGGTMRNV PVGAGRRKNK NSAPHCRHIT IPEALQAERI 240 DPPNGFHHPT FKPNGIVLSF GPDSPLSESM ASILSLSEKK VPNGIHNGFY GPENKNSFRE 300 GGENGDDCCG GSSVTTSTSM VDGGTHRHNE VVAPNVNGFA PPVPCMPGIP WPYPWNAAVP 360 LPAICPPGYP LPLCPPPYWN CNMLGPWSIP WLTPPLPNEN PKGSGSTPNS PLGKHSREGD 420 LLNSNSPDEK EPSEEKNSER SVLVPKTLRI DDPNEAAKSS IWSTLGIKYD SVSRGGLFKA 480 LQPKSDKKDD TATTSPILQA NPAALSRSLS FQERA

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MRESKDPEIK LFGKKIALPE NEKVLPLTLS GEDSGYKNSG NASCGVKDSD TSVKDSETNT  60
GFDCDGCLED EKASSEEKDE EIDEENQEAE KNHISGELSK TKSEEKDQNQ MMEGSEDPKL  120
SSESDNNPKT PNIDEDSPAI KTSKTKNDPN DASNSQEKPL KKPDKILPCP RCNSIDTKFC  180
YYNNYNVNQP RHFCKSCQRY WTAGGTMRNV PVGAGRRKNK NSAPHCRHIT IPEALQAERI  240
DPPNGFHHPT FKPNGIVLSF GPDSPLSESM ASILSLSEKK VPNGIHNGFY GPENKNSFRE  300
GGENGDDCCG GSSVTTSTSM VDGGTHRHNE VVAPNVNGFA PPVPCMPGIP WPYPWNAAVP  360
LPAICPPGYP LPLCPPPYWN CNMLGPWSIP WLTPPLPNEN PKGSGSTPNS PLGKHSREGD  420
LLNSNSPDEK EPSEEKNSER SVLVPKTLRI DDPNEAAKSS IWSTLGIKYD SVSRGGLFKA  480
LQPKSDKKDD TATTSPILQA NPAALSRSLS FQERA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258034.1	0.0	PREDICTED: cyclic dof factor 3
TrEMBL	A0A314LGI7	0.0	A0A314LGI7_NICAT; Cyclic dof factor 3
STRING	XP_009587736.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-87	cycling DOF factor 3