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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf07223g00002.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
AP2 |
| Protein Properties |
Length: 255aa MW: 28621.6 Da PI: 7.6611 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf07223g00002.1 | genome | BTI | - |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 36.6 | 1.1e-11 | 64 | 125 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.........kr..krfslgkfgtaeeAakaaiaarkk 52
s+y+GV+ +k grW+A+ e++ + ++++lg f+++ eAa+a+++a+ +
Niben101Scf07223g00002.1 64 SKYRGVTLHK-CGRWEARMGQLLERKgvlltscctLCacRYIYLGLFDSEIEAARAYDEAAIR 125
89********.7******777545445999987773367**********99*********976 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MLTDGGKQVY LGGFDTAHTA ARRYINFNIC DYEDDLKQMN NYSNEEFVHI LHHRQSSGFS 60
RGSSKYRGVT LHKCGRWEAR MGQLLERKGV LLTSCCTLCA CRYIYLGLFD SEIEAARAYD 120
EAAIRSSGKE AVTNFGQPQI RSWLETTNLY IDAGTTRNLD LNLGISPSSY ADNQHGNTSQ 180
IGNFQGQHGS NGLPEHRRQD QNTNGGSRTV PPQHHQDSKI QQSLHHQLHF GSGALPYHHS 240
QSLTNMNLSH NYCTS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
| Publications
? help Back to Top |
- Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
Plant J., 2012. 69(3): p. 445-61
[PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice.
Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
[PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
Front Plant Sci, 2016. 7: p. 1891
[PMID:28066457]
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