PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07203g02006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 243aa MW: 28123.8 Da PI: 7.821 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.1 | 1.4e-33 | 23 | 114 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 Fl k+y ++ed++++++isw+++g++f+v ++ efa+++Lp+ Fkh nf+SF+RQLn+YgF+k+ +++ weF+++ F Niben101Scf07203g02006.1 23 FLLKTYMMVEDPATDDVISWNADGTAFIVRQPAEFARDLLPTLFKHCNFSSFLRQLNTYGFRKIATSQ---------WEFSNNMF 98 9****************************************************************998.........******** PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkks 102 +kg+k+ll++i+r++ Niben101Scf07203g02006.1 99 RKGEKDLLCDIRRRNA 114 *************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.0E-35 | 16 | 107 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.5E-31 | 19 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 9.8E-50 | 19 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 23 | 46 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.9E-30 | 23 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 62 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-17 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGELDQCEST LLEYVRKSST PPFLLKTYMM VEDPATDDVI SWNADGTAFI VRQPAEFARD 60 LLPTLFKHCN FSSFLRQLNT YGFRKIATSQ WEFSNNMFRK GEKDLLCDIR RRNAWKSKQQ 120 TNKKINIGQN NAANKKERDE DQRSSSSTSS SSEYNSLIDE NKRLKMENGV LSSELSTINK 180 KCKELIDVVA MLAENSEEEE EGQQDQRPML FGVRLEVQEE MERKRKRAKF TQTVGVFLSQ 240 LCK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5w_B | 2e-20 | 23 | 112 | 4 | 104 | Putative transcription factor |
5d5x_B | 2e-20 | 23 | 112 | 4 | 104 | Putative transcription factor |
5d5x_E | 2e-20 | 23 | 112 | 4 | 104 | Putative transcription factor |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016434894.1 | 1e-156 | PREDICTED: heat stress transcription factor B-3-like | ||||
Swissprot | O22230 | 8e-65 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | A0A1S3X4P1 | 1e-154 | A0A1S3X4P1_TOBAC; heat stress transcription factor B-3-like | ||||
STRING | XP_009775017.1 | 1e-155 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4423 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 1e-62 | heat shock transcription factor B3 |