PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07168g02012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 761aa    MW: 88497.9 Da    PI: 4.7868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07168g02012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM78.21.9e-24121422128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgy 82 
                               p+G+rFhPt+ e++ +yL   v++++l+ ++  ++ +d+y   ePw++ +++++  +++  yf ++++k+++t kr +r++ +g+
  Niben101Scf07168g02012.1  12 PVGYRFHPTNREVL-RYLIGFVRDEPLPSQNElMQVADLYADkEPWQIFEAYDQenNNNTRYFITPQKKEKPTWKRVSRTVGKGT 95 
                               89**********99.9**********88877747777*997559****7433331144467************************ PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                               Wk +gk +ev++ kg+l+g  k+L +   +++++ ++ +W+m ey+l
  Niben101Scf07168g02012.1  96 WKPQGKGREVFDDKGRLMGYVKSLKYIpANKSSNNVNGEWLMTEYSL 142
                               ***************************656888889*********97 PP
2NAM76.46.6e-242413712128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgy 82 
                               p+G+rFhPt+ e++ +yL   v++++l+ ++  ++ +d+y   ePw++ +++++  +++  yf ++++k+++t kr +r++ +g+
  Niben101Scf07168g02012.1 241 PVGYRFHPTNREVL-RYLIGFVRDEPLPSQNElMQVADLYADkEPWQIFEAYDQenNNNTRYFITPQKKEKPTWKRVSRTVGKGT 324
                               89**********99.9**********88877747777*997559****7433331144467************************ PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                               Wk +gk +ev++ kg+l+g  k+L +   ++ ++ ++ +W+m ey+l
  Niben101Scf07168g02012.1 325 WKPQGKGREVFDDKGRLMGYVKSLKYIpANKLSNNVNGEWLMTEYSL 371
                               ***************************656778889*********97 PP
3NAM76.46.6e-245026322128
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgy 82 
                               p+G+rFhPt+ e++ +yL   v++++l+ ++  ++ +d+y   ePw++ +++++  +++  yf ++++k+++t kr +r++ +g+
  Niben101Scf07168g02012.1 502 PVGYRFHPTNREVL-RYLIGFVRDEPLPSQNElMQVADLYADkEPWQIFEAYDQenNNNTRYFITPQKKEKPTWKRVSRTVGKGT 585
                               89**********99.9**********88877747777*997559****7433331144467************************ PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                               Wk +gk +ev++ kg+l+g  k+L +   ++ ++ ++ +W+m ey+l
  Niben101Scf07168g02012.1 586 WKPQGKGREVFDDKGRLMGYVKSLKYIpANKLSNNVNGEWLMTEYSL 632
                               ***************************656778889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-288165IPR003441NAC domain
PROSITE profilePS5100528.85111165IPR003441NAC domain
PfamPF023654.6E-1212142IPR003441NAC domain
SuperFamilySSF1019411.96E-27237394IPR003441NAC domain
PROSITE profilePS5100528.581240394IPR003441NAC domain
PfamPF023655.7E-12241371IPR003441NAC domain
SuperFamilySSF1019411.22E-27496655IPR003441NAC domain
PROSITE profilePS5100528.581501655IPR003441NAC domain
PfamPF023655.7E-12502632IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MEYSHAKCFS GPVGYRFHPT NREVLRYLIG FVRDEPLPSQ NELMQVADLY ADKEPWQIFE  60
AYDQENNNNT RYFITPQKKE KPTWKRVSRT VGKGTWKPQG KGREVFDDKG RLMGYVKSLK  120
YIPANKSSNN VNGEWLMTEY SLFDRYLPAR EIKNKGFVIC KIKKKGKPGD KIKGNNIDEV  180
VNDENIRDIE EFIDTVLQED VQVEDNGIRS NDIEKDDQEN NIIQYAEGDQ VRDHAKCFSG  240
PVGYRFHPTN REVLRYLIGF VRDEPLPSQN ELMQVADLYA DKEPWQIFEA YDQENNNNTR  300
YFITPQKKEK PTWKRVSRTV GKGTWKPQGK GREVFDDKGR LMGYVKSLKY IPANKLSNNV  360
NGEWLMTEYS LFDRYLAARE IKNKGFVICK IKKKGKPGDK IKGNNIDEVV NDENMRDIEE  420
FIDTVLQEDV QVEDNGIRSN GIEKDDQENN IIQYAEGDQV RDHVLGLLDS PEDTVDVNDH  480
EEYVEDCVDE GDEVQAKCFS GPVGYRFHPT NREVLRYLIG FVRDEPLPSQ NELMQVADLY  540
ADKEPWQIFE AYDQENNNNT RYFITPQKKE KPTWKRVSRT VGKGTWKPQG KGREVFDDKG  600
RLMGYVKSLK YIPANKLSNN VNGEWLMTEY SLFDRYLAAR EIKNKGFVIC KIKKKGKPGD  660
KIKGNNIDEV VNDENMRDIE EFIDTVLQED VQVEDNGIRS NGIEKDDQEN NIIQYAEGDQ  720
VRDHVLAKDD EENMEYQVED NQPATFWASA EDIDLDTLNF F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238684.11e-166PREDICTED: NAC domain-containing protein 30-like
TrEMBLA0A1J6JUZ11e-168A0A1J6JUZ1_NICAT; Nac domain-containing protein 43
STRINGXP_009762991.11e-158(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.12e-14NAC domain containing protein 84