PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07162g05028.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 241aa    MW: 28211.1 Da    PI: 6.8603
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07162g05028.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.77.8e-22131413128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                               +G+rFhPt+ el+ ++Lk+ ++g+ l+ e + ++ +diy    Pw++  ++ ++ eek  y F+  +kk+++ +r +r+ + g+W
  Niben101Scf07162g05028.1  13 MGVRFHPTEAELI-NFLKRFLKGELLQSECHnFQLADIYGDqPPWEIFeANSDHpEEKVRYIFTGLKKKKREHTRVRRTCAYGTW 96 
                               7************.9********9977755559999***87368***6233333244566************************* PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k +    ++++ kg++vg ++ ++f + +++  ++  W+m ey++
  Niben101Scf07162g05028.1  97 KGQTGIDPIKKGKGTVVGFRRCFMFQSRSKEGEHNKIWLMREYSV 141
                               *8888899**99*************977777667888******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-253163IPR003441NAC domain
PROSITE profilePS5100524.78211164IPR003441NAC domain
PfamPF023652.5E-1313141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSMVPAARRG CIMGVRFHPT EAELINFLKR FLKGELLQSE CHNFQLADIY GDQPPWEIFE  60
ANSDHPEEKV RYIFTGLKKK KREHTRVRRT CAYGTWKGQT GIDPIKKGKG TVVGFRRCFM  120
FQSRSKEGEH NKIWLMREYS VGDDFFRENN IPKEDIVVCR IKKNVRSKKN HGVNMEEQDV  180
PQVIEAMLRG PDEDYCTTVQ PETICQAADQ HQVNDWSNYQ QEFNWADDML IGIDEFGDII  240
W
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461013.11e-161PREDICTED: NAC domain-containing protein 53-like
TrEMBLB3VK721e-163B3VK72_TOBAC; NAC transcription factor
STRINGXP_009793650.11e-159(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.19e-15NAC domain containing protein 2