PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07152g04032.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 542aa    MW: 60291.1 Da    PI: 4.4534
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07152g04032.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.12.8e-52101371128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               l+pGfrFhPtdeelv +yL++k+ gk+l + ++i+e+diykvePwdLp  +++k+++ ewyfFs  dkk+ +g ++nrat++gyW
  Niben101Scf07152g04032.1  10 LAPGFRFHPTDEELVRYYLRRKIIGKPLIF-DAISEIDIYKVEPWDLPgmSRLKTRDLEWYFFSMLDKKHGNGAKTNRATERGYW 93 
                               579************************877.99***************6347788888*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k+tgkd++v++ k+++vg+kktLv+++grapkg++t+Wvmhey+l
  Niben101Scf07152g04032.1  94 KTTGKDRAVHH-KSKVVGMKKTLVYHSGRAPKGQRTNWVMHEYKL 137
                               ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-629160IPR003441NAC domain
PROSITE profilePS5100558.30610160IPR003441NAC domain
PfamPF023656.9E-2812137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MESKGSKNLL APGFRFHPTD EELVRYYLRR KIIGKPLIFD AISEIDIYKV EPWDLPGMSR  60
LKTRDLEWYF FSMLDKKHGN GAKTNRATER GYWKTTGKDR AVHHKSKVVG MKKTLVYHSG  120
RAPKGQRTNW VMHEYKLIDE ELDKAGIAQD AFVLCRIFQK SGAGPKNGEK YGAPFVEEEW  180
EDDELEIVPK EEAADEVEFG DDIYLGGHDL EQILGTDTPV DGAPPPFNHY CEENASNSGG  240
TSNSFEDTEK LLQPPDEQES FDPAIEENAN ANPVKHEFMS EPSKNVNSED VDYLLNEPIE  300
TATDTLQFND GAFLEASDLS RPIDTSSFDM LEEYLTFFDA DDDFQNMGFD PLMMTGGDDH  360
VSDLASLADK NIGEVADQPI APSEEPASQK ANVASSSKLE PSKFGSDYKY PFMKQASCML  420
GGIPAPPAFA SEFPSKNPAF RMNSSSEASS SIHVTAGYIQ IRNMTMNGNG TDGLVGKHGN  480
YNILLSFGLS QHVDSSTSLE SVDSILPGKT TSTASWCWFY YLFSWVLVLS MSFKIGTLIR  540
AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-441016620174NAC domain-containing protein 19
3swm_B1e-441016620174NAC domain-containing protein 19
3swm_C1e-441016620174NAC domain-containing protein 19
3swm_D1e-441016620174NAC domain-containing protein 19
3swp_A1e-441016620174NAC domain-containing protein 19
3swp_B1e-441016620174NAC domain-containing protein 19
3swp_C1e-441016620174NAC domain-containing protein 19
3swp_D1e-441016620174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764398.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016467787.10.0PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1S3ZTU30.0A0A1S3ZTU3_TOBAC; NAC domain-containing protein 78-like
TrEMBLA0A1U7VDG20.0A0A1U7VDG2_NICSY; NAC domain-containing protein 78-like
STRINGXP_009764398.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-133NAC domain containing protein 2