PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07004g02016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 139aa MW: 15712.1 Da PI: 8.4753 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.4 | 1.5e-19 | 49 | 133 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++ps+v+ +l lp +f++++ ++++ t+tl de+g++W + +k++ l++GWk+F+ +++L +gD +vF+l++ + Niben101Scf07004g02016.1 49 SMLPSHVSGGFWLGLPSNFCRKNL--PRRDDTITLIDETGEEWPTVYLAQKNG----LSGGWKKFAVDHDLADGDAIVFHLIRPT 127 689*****************9995..346679***************555555....9************************978 PP EE..EEEE CS B3 89 efelvvkv 96 +f +v++ Niben101Scf07004g02016.1 128 KF--KVTI 133 88..6665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-25 | 39 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-22 | 40 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.60E-27 | 44 | 135 | No hit | No description |
PROSITE profile | PS50863 | 13.789 | 46 | 137 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.1E-24 | 46 | 137 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-17 | 49 | 133 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MIPRRMSTPR KRDLSNMVYA TDEERAASIE KAEKLEASLG PDYPILIRSM LPSHVSGGFW 60 LGLPSNFCRK NLPRRDDTIT LIDETGEEWP TVYLAQKNGL SGGWKKFAVD HDLADGDAIV 120 FHLIRPTKFK VTILNIKDV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783454.1 | 7e-96 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Refseq | XP_016434462.1 | 7e-96 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q69V36 | 4e-52 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A1S3X3J5 | 2e-94 | A0A1S3X3J5_TOBAC; B3 domain-containing protein At5g42700-like | ||||
TrEMBL | A0A1U7X950 | 2e-94 | A0A1U7X950_NICSY; B3 domain-containing protein At5g42700-like | ||||
STRING | XP_009783454.1 | 3e-95 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-51 | B3 family protein |
Publications ? help Back to Top | |||
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