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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Niben101Scf07000g01004.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
C3H |
Protein Properties |
Length: 355aa MW: 39895.2 Da PI: 7.6637 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf07000g01004.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 18 | 5.1e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k++lC+ f+ G C G+ C F+H+
Niben101Scf07000g01004.1 3 KRVLCK-FFVHGACLKGEYCEFSHD 26
99****.7777*************5 PP
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2 | zf-CCCH | 22.5 | 2e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C ++++ G C yG+rC++ H+
Niben101Scf07000g01004.1 34 VCTYYQK-GLCAYGSRCRYEHV 54
5******.***********997 PP
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3 | zf-CCCH | 21.9 | 3.1e-07 | 139 | 159 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
+C+ a+ G C++G++C+++Hg
Niben101Scf07000g01004.1 139 ICS-LAAAGNCPRGEKCPYIHG 159
677.8999*************9 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 13.544 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.145 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0012 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-5 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.253 | 134 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.08 | 136 | 160 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 139 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-4 | 140 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 3.26E-12 | 195 | 267 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 1.9E-9 | 196 | 262 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 4.85E-4 | 202 | 262 | No hit | No description |
Pfam | PF00097 | 3.0E-6 | 203 | 260 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 1.1E-6 | 203 | 260 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 12.15 | 203 | 261 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 227 | 236 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.07 | 290 | 318 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.488 | 290 | 319 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MSKRVLCKFF VHGACLKGEY CEFSHDWKDP PNNVCTYYQK GLCAYGSRCR YEHVKVSQQH 60 SPPSSSAPAQ YLHSDPSPTT LSPGMLADGA GLSAEYLTSG RPSYPPNQAA WSENSEHHHV 120 EEIANFVELK RLYPANQSIC SLAAAGNCPR GEKCPYIHGD LCPLCAKHCL HPFRPQESEE 180 HMKTCEKRQK HLDLLKHSQE IECCVCLERV LAKTTAAERK FGILSECDHP FCISCIRNWR 240 SGSPSSGIDI NSTFRTCPVC RKLSYFVIPS VIWYSTKEEK QDILDSYKAK LRSIDCKHFD 300 FGNGTCPFGA SCFYKHQYRD GHLEEVVVRH LGSEDGSTVV AKNISANSPG DMRWS
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