PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf06986g02003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 161aa MW: 17750.9 Da PI: 8.2051

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06986g02003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.8	1.5e-42	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrrkC ++C++apyfp e+p kf vhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+ Niben101Scf06986g02003.1 11 PCAACKFLRRKCLPSCIFAPYFPPEEPIKFTTVHKVFGASNVSKLLNEIQPHQREDAVNSLTYEAEARLKDPVYGCVGAISVLQK 95 7********************************************************************************** PP DUF260 86 qleqlkaelallke 99 q+ +l++el+++++ Niben101Scf06986g02003.1 96 QVIRLQKELDATNA 109 *******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.012	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-42	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MSSSSSYSNP PCAACKFLRR KCLPSCIFAP YFPPEEPIKF TTVHKVFGAS NVSKLLNEIQ 60 PHQREDAVNS LTYEAEARLK DPVYGCVGAI SVLQKQVIRL QKELDATNAD LMRYASYESR 120 GGTGTLIGQT YGMFGPRHSS AWNSRINSGD HNNGIDDDSG R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-63	11	127	11	126	LOB family transfactor Ramosa2.1
5ly0_B	9e-63	11	127	11	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019226510.1	1e-111	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_019226511.1	1e-111	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_019226512.1	1e-111	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	2e-66	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A314KRS4	1e-109	A0A314KRS4_NICAT; Lob domain-containing protein 25
STRING	XP_009757880.1	1e-97	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	9e-67	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]