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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06984g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 326aa MW: 35503 Da PI: 8.5578 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g Niben101Scf06984g02002.1 60 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 109 59****999.**********954...5999*******************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.339 | 60 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.86E-21 | 60 | 119 | No hit | No description |
SuperFamily | SSF54171 | 9.81E-21 | 60 | 118 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-11 | 60 | 105 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-29 | 60 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-38 | 60 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 61 | 72 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MSTSPKAQHL IPSQTVPITS EEKTTTISSA TVSDTTSTST SSNSNKKGKG KGGPDNNKFR 60 YRGVRQRSWG KWVAEIREPR KRTRRWLGTF ATAEDAARAY DRAAIILYGS RAQLNLQPST 120 VNNSSSSSQS SKKSSSSFST QTLRPLLPRP SGFAFTSFSS PNTAPPVSNS VGAGCGYVPY 180 GFFPAVKYSQ ELVQPHQQQQ QYAICDGYGP EADNLAHEAG TTCSYSSPSP NPSHIQEKPP 240 KQEDQSSHHE YQNQQQNTLF GETINPFVGS SMSFCSTQTI AAPVVSDPVA VMGGPGSPVF 300 WPTNDDGNYP AVNFWDYSYD SFMFDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-18 | 61 | 116 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016480146.1 | 1e-172 | PREDICTED: ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | A0A314L7U6 | 1e-173 | A0A314L7U6_NICAT; Ethylene-responsive transcription factor abi4 | ||||
STRING | XP_009776130.1 | 1e-171 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40220.1 | 1e-28 | ERF family protein |