PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

Niben101Scf06942g01004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 363aa MW: 40988.8 Da PI: 6.8573

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06942g01004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	54.8	2.8e-17	241	293	48	100
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++e Niben101Scf06942g01004.1 241 ELPVQQRADAVSSLVYEANARVRDPVYGCVGAISLLQNQVSQLQMQLAVAQAE 293 68999*******************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.0E-15	241	291	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042138	Biological Process	meiotic DNA double-strand break formation

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MSIAVSQISL FQSQIESRRF NEGTIRVLES FLALNDFKSL DGVVRTLKQF MRNESLCIIQ 60 EIAGKSTEHK LLIVDFLVRV FALIGDTESC LALRYEALLM REQKATSDQR LLVLYSEWLT 120 FAEHSLENGF CSIAKKACEK ALLCFEMNIV IDPGKDDFVI EKIKKLKDIA VISASSRSVQ 180 AQAVEYFKKK TILQTSQESY TSVEAKSSGS TLFRNGIKRR HRRQLDEHRH LEQNEEVSGD 240 ELPVQQRADA VSSLVYEANA RVRDPVYGCV GAISLLQNQV SQLQMQLAVA QAEILCIQMQ 300 QEPVPSLPTT CLMEPHIEKS SPFSTSNATN YNFNNNLQSY LSFTSSSTSH VMQDPVKRES 360 LRT

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MSIAVSQISL FQSQIESRRF NEGTIRVLES FLALNDFKSL DGVVRTLKQF MRNESLCIIQ  60
EIAGKSTEHK LLIVDFLVRV FALIGDTESC LALRYEALLM REQKATSDQR LLVLYSEWLT  120
FAEHSLENGF CSIAKKACEK ALLCFEMNIV IDPGKDDFVI EKIKKLKDIA VISASSRSVQ  180
AQAVEYFKKK TILQTSQESY TSVEAKSSGS TLFRNGIKRR HRRQLDEHRH LEQNEEVSGD  240
ELPVQQRADA VSSLVYEANA RVRDPVYGCV GAISLLQNQV SQLQMQLAVA QAEILCIQMQ  300
QEPVPSLPTT CLMEPHIEKS SPFSTSNATN YNFNNNLQSY LSFTSSSTSH VMQDPVKRES  360
LRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-17	240	295	57	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-17	240	295	57	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225529.1	1e-163	PREDICTED: uncharacterized protein LOC109207098 isoform X3
TrEMBL	A0A1S4C2U4	1e-160	A0A1S4C2U4_TOBAC; uncharacterized protein LOC107814565 isoform X3
TrEMBL	A0A1S4C348	1e-160	A0A1S4C348_TOBAC; uncharacterized protein LOC107814565 isoform X1
TrEMBL	A0A1U7V260	1e-160	A0A1U7V260_NICSY; uncharacterized protein LOC104212821 isoform X2
STRING	XP_009760472.1	1e-153	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-34	LBD family protein