PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06799g01005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 343aa MW: 37238.9 Da PI: 6.6739

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06799g01005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Niben101Scf06799g01005.1 132 YECKTCNRTFPSFQALGGHRASH 154 99**********99999998887 PP
2	zf-C2H2	13.4	0.00022	236	258	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Niben101Scf06799g01005.1 236 HECSICGSEFSSGQALGGHMRKH 258 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.4E-13	131	156	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.53E-8	131	154	No hit	No description
PROSITE profile	PS50157	10.637	132	159	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	132	154	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	134	154	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.53E-8	231	258	No hit	No description
PROSITE profile	PS50157	9.91	236	263	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.0E-11	236	259	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	236	258	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	238	258	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEVFQDFTDR SYAFKGKRSK RSRPSSPFDI AGTMVTSSSS VAGGSDDGSG TGGDVYYSSA 60 VIQYSPTTST TQNIATSSTS EEDEDIANCL ILLAQNGRKV QVLTEVKKEK ISSRKFTEMV 120 NTTTGKVGFF VYECKTCNRT FPSFQALGGH RASHRRPKTT VEEKKSGTIT ATATATATDS 180 AGADSLVENY DDYHVKIDQE EGRLNKISAS LSIQIANNNK GINSHGNSYS IKPNIHECSI 240 CGSEFSSGQA LGGHMRKHKP PTTTTAATNT KVSTNTHIET ISNFSESSHD DVGGANYKEE 300 EKSTRNFLSL DLNLPAPPED DRRETKFEQS LVFSAAPLVD CHY

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEVFQDFTDR SYAFKGKRSK RSRPSSPFDI AGTMVTSSSS VAGGSDDGSG TGGDVYYSSA  60
VIQYSPTTST TQNIATSSTS EEDEDIANCL ILLAQNGRKV QVLTEVKKEK ISSRKFTEMV  120
NTTTGKVGFF VYECKTCNRT FPSFQALGGH RASHRRPKTT VEEKKSGTIT ATATATATDS  180
AGADSLVENY DDYHVKIDQE EGRLNKISAS LSIQIANNNK GINSHGNSYS IKPNIHECSI  240
CGSEFSSGQA LGGHMRKHKP PTTTTAATNT KVSTNTHIET ISNFSESSHD DVGGANYKEE  300
EKSTRNFLSL DLNLPAPPED DRRETKFEQS LVFSAAPLVD CHY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258773.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A314LFH2	0.0	A0A314LFH2_NICAT; Zinc finger protein zat5
STRING	XP_009601615.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-47	C2H2 family protein