PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06752g02003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 496aa MW: 52893.5 Da PI: 8.7885

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06752g02003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	116.8	3e-36	137	239	4	103
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqs 84 +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++++ + a+ +++++k++r +s++++ Niben101Scf06752g02003.1 137 SSATCQDCGNQAKKDCPHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLIGGTSTNVNVAAGssshSTSSAKKPRLVNSQATT 221 5689*********************************************987666555443322334477788888988888888 PP DUF702 85 alsstklssaeskkelets 103 ++s+t++s+++++ +++ts Niben101Scf06752g02003.1 222 TASHTSTSNTTPR-SFDTS 239 8888888887654.55554 PP
2	DUF702	212.9	7.5e-66	284	447	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqs 84 +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++++ + a+ +++++k++r +s++++ Niben101Scf06752g02003.1 284 SSATCQDCGNQAKKDCPHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLIGGTSTNVNVAAGssshSTSSAKKPRLVNSQATT 368 5689*******************************************987666555443322334477788888988888888 PP DUF702 85 alsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s+t++s+++ +++++tss lP +v+++avf+cvrv+svddg++e+aYq++v igGhvfkG+LydqG+ee Niben101Scf06752g02003.1 369 TASHTSTSNTT-PRSFDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDDGDDEFAYQAVVRIGGHVFKGFLYDQGIEE 447 88888888876.55777777799****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.3E-33	138	235	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-26	140	182	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	3.4E-62	285	446	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-26	287	329	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-28	398	445	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MWSASSSRQM QINYGLSPEM GMFVVHPASF HHHHHHQHSH QENTINFDPI NGSNISTTNT 60 SLGVGVIPLL TATPLTNMVS FDDQDLVSRN RGNDTEGGGF QFFSNQQPQN STNYTKNSNI 120 LGSGNDNNIG GSVSSTSSAT CQDCGNQAKK DCPHRRCRTC CKSRGFDCTT HVKSTWVPAA 180 RRRERQLIGG TSTNVNVAAG SSSHSTSSAK KPRLVNSQAT TTASHTSTSN TTPRSFDTSS 240 SHQGGGFQFF SNQQPQNSTN YTKNSNILGS GNDNNIGGSV SSTSSATCQD CGNQAKKDCP 300 HRRCRTCCKS RGFDCTTHVK STWVPAARRR ERQLIGGTST NVNVAAGSSS HSTSSAKKPR 360 LVNSQATTTA SHTSTSNTTP RSFDTSSSHQ DASFKASLPG QVRAPAVFKC VRVTSVDDGD 420 DEFAYQAVVR IGGHVFKGFL YDQGIEEGKD YNNYPNLSDL HLGGSGNITS ETSDIYAASA 480 AGGGLLGGSN YGNQIN

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MWSASSSRQM QINYGLSPEM GMFVVHPASF HHHHHHQHSH QENTINFDPI NGSNISTTNT  60
SLGVGVIPLL TATPLTNMVS FDDQDLVSRN RGNDTEGGGF QFFSNQQPQN STNYTKNSNI  120
LGSGNDNNIG GSVSSTSSAT CQDCGNQAKK DCPHRRCRTC CKSRGFDCTT HVKSTWVPAA  180
RRRERQLIGG TSTNVNVAAG SSSHSTSSAK KPRLVNSQAT TTASHTSTSN TTPRSFDTSS  240
SHQGGGFQFF SNQQPQNSTN YTKNSNILGS GNDNNIGGSV SSTSSATCQD CGNQAKKDCP  300
HRRCRTCCKS RGFDCTTHVK STWVPAARRR ERQLIGGTST NVNVAAGSSS HSTSSAKKPR  360
LVNSQATTTA SHTSTSNTTP RSFDTSSSHQ DASFKASLPG QVRAPAVFKC VRVTSVDDGD  420
DEFAYQAVVR IGGHVFKGFL YDQGIEEGKD YNNYPNLSDL HLGGSGNITS ETSDIYAASA  480
AGGGLLGGSN YGNQIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009796421.1	1e-151	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_016458851.1	1e-151	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	6e-74	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1S3Z339	1e-150	A0A1S3Z339_TOBAC; protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBL	A0A1U7Y389	1e-150	A0A1U7Y389_NICSY; protein LATERAL ROOT PRIMORDIUM 1
STRING	XP_009796421.1	1e-151	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-67	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]