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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06748g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 135aa MW: 15784.3 Da PI: 10.2943 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.6 | 2.4e-06 | 22 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Niben101Scf06748g00004.1 22 FVCEICNKGFQRDQNLQLHRRGH 44 89*******************88 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 98 | 120 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Niben101Scf06748g00004.1 98 WKCDKCSKRYAVQSDWKAHSKIC 120 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-6 | 21 | 44 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.02E-7 | 21 | 44 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 22 | 44 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 1.4E-5 | 22 | 44 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 22 | 44 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 24 | 44 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.2E-5 | 86 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.02E-7 | 93 | 118 | No hit | No description |
SMART | SM00355 | 140 | 98 | 118 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MQHPEAEVIA LSPKSLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRTNKEVKK 60 KVYVCPEPSC VHHHPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC 120 GTREYRCDCG TLFSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-22 | 94 | 135 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 9e-22 | 94 | 135 | 3 | 44 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024365599.1 | 7e-95 | protein indeterminate-domain 1-like isoform X1 | ||||
Swissprot | Q9SCQ6 | 2e-91 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2G2YXD3 | 1e-93 | A0A2G2YXD3_CAPAN; Zinc finger protein NUTCRACKER | ||||
TrEMBL | A0A2K1L2D8 | 2e-93 | A0A2K1L2D8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S43_228V6.1 | 1e-93 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 6e-94 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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